Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq7629 87.8 1e-12 >seq7629 Length=3052 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || ||||||||||| || |||||||| | || ||| | |||| || Sbjct 2739 CACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTTCTACCGTCTTC 2798 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || || || || ||| | || |||||||| ||||| || | || || ||||| Sbjct 2799 CAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCTTCCTTGTCCTG 2858 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | ||| || ||| ||||||| || | ||| || || || Sbjct 2859 AATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGGGTGATAGTCTT 2918 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 ||| || ||||| ||||| || || | |||||| Sbjct 2919 ACCAGTCAAAGTCTTGACGAAGATCTACATTTT 2951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414445378329286