Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq18359 168 2e-36 seq7629 158 3e-33 seq20592 129 1e-24 seq18358 109 1e-18 seq12789 102 2e-16 seq16208 84.2 5e-11 >seq18359 Length=859 Score = 168 bits (186), Expect = 2e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || ||||| || | ||||| || || ||||| |||||||| Sbjct 327 CCACCTCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTG 386 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||| ||||| || | ||||| ||||| || || ||||||||||| || || Sbjct 387 AGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGG 446 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| ||||| || || ||||| ||||| ||||| || | ||| ||| ||||| || Sbjct 447 ATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACG 506 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || ||||| || || || || |||||||| || |||||| Sbjct 507 TCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 Score = 129 bits (142), Expect = 1e-24 Identities = 180/251 (72%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 104309 GAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGAT 104368 |||||||| || | || | ||||| ||||||| || || || | ||| | || || Sbjct 532 GAGTCTTTACAAAAATT-TGCATTCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGAC 590 Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || |||||||| || ||||| || ||||| |||||||| ||||| ||||| || ||| Sbjct 591 TCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAA 650 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || ||||||||||| || || || || || || ||||| || || || || || || Sbjct 651 ATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTC 710 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| || || || || || | ||||| ||||| || || || || || || Sbjct 711 TCAATGGTGTCAGATGGCTCAACGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACG 770 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 771 AAAATTTGCAT 781 >seq7629 Length=3052 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || || || || | || | || || || || || || || || ||||| Sbjct 2722 CCACCTCTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGAC 2781 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||||||||| | | ||||||||||| || || ||||||||||||||||| Sbjct 2782 AAGGTTCTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGG 2841 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || ||||||||||| || || || ||||| | ||| ||| ||| || || Sbjct 2842 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACA 2901 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || |||||||||||||| | || || || || |||| |||||| Sbjct 2902 TCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACATTTT 2951 >seq20592 Length=348 Score = 129 bits (142), Expect = 1e-24 Identities = 135/176 (77%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| | |||||| ||||| || || | || |||||||| || Sbjct 2 GAGAGGGTTCTACCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGT 61 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || || |||||||| | |||||| || || Sbjct 62 GGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCA 121 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 || |||| |||||||| |||||||| |||||||| || || || | ||| ||||| Sbjct 122 ACGTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTTTGT 177 >seq18358 Length=408 Score = 109 bits (120), Expect = 1e-18 Identities = 116/152 (76%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || |||||||| ||||| || |||||||| ||||| || || ||||| || ||||||||| Sbjct 405 TGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGAATC 346 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || || |||||||| | ||| || || || || || || || || ||||| ||| Sbjct 345 TTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAACATCGAGGGTGATGGTCTTTCCA 286 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT-TTTGT 104564 || || ||||| || || || | ||| ||||| Sbjct 285 GTGAGGGTTTTGACGAAAATTTACATATTTGT 254 >seq12789 Length=2278 Score = 102 bits (112), Expect = 2e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 269085 CTGAATGGGCTCTGAAATGGATAAACGATAGC-GCGCCTTACGGAGAAAGGTTAGTTGCT 269143 |||| |||||||| ||||| ||||| | ||||||| || || || | ||||| Sbjct 970 CTGATTGGGCTCTCCGCTGGATCAACGACCACAGCGCCTT-CGCCGAGAGACTTGTTGCC 912 Query 269144 TTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAG 269203 || || ||||| || || || ||||| || || ||||| | | ||||| ||| | ||| Sbjct 911 TTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTTTCTGCTCCATCTTCTGGCTCAAG 852 Query 269204 AAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGT 269263 ||| | ||||| ||||| || | || ||||| ||||| ||||| | | || || ||| Sbjct 851 AAACGTGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGTTGATCTCCCGTGATGAGGGT 792 Query 269264 TTACACTGCGACTTCGCTTG 269283 | ||| |||||||||||| Sbjct 791 ATGCACACCGACTTCGCTTG 772 >seq16208 Length=437 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 |||| ||||| | | ||||| ||||| | |||||||||| || |||||||||||| Sbjct 254 ATTCAACCTCTCATTTTGAGTACGAGATGGAGAGTAGATTCTTATTGGATATTATAGTCA 313 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATC 104445 || | ||| | ||||||||| || ||||| || |||| || ||||||||||| Sbjct 314 GAGAAGGTTTTGTCGTCTTCTAACTGCTTTCCTGCGAAAAGGAGTCTCTGTTGATC 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151026361948052