Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq24216 122 5e-23 >seq24216 Length=1664 Score = 122 bits (134), Expect = 5e-23 Identities = 187/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 72318 GAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTG 72377 || ||| | |||||||| || |||| | |||||||| ||||| || || Sbjct 951 GAGATTTCAGAGATTTCACGAAGTATGAAAGGCTTGGCGAAAGAATTGGGTTGTCCAGTA 1010 Query 72378 GTGGCATTGTCACAACTTAATCGATCGCTTGAACAGCGTGCGGACAAACGACCGGTAAAT 72437 | || ||||| || || || || || | ||||| || | | || || || || | Sbjct 1011 ATTGCTTTGTCGCAGCTAAACCGTTCATTGGAACAACGCCCCAATAAGCGTCCTGTTATG 1070 Query 72438 TCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTAT 72497 |||||||| || ||||||||||| |||||||| || || ||| | ||| ||||| | ||| Sbjct 1071 TCAGATTTGCGCGAATCAGGAGCGATTGAGCAAGATGCGGACGTTATTTTGTTTATTTAT 1130 Query 72498 CGCGACGAAGTTTATCACCCGGA-TAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGG 72556 ||||| | |||||| |||| || | || | || || |||| || ||| | |||||||| Sbjct 1131 CGCGATCAGGTTTATAACCCTGATTCGCCAGAT-AAAGGCACCGCTGAGATTATTATCGG 1189 Query 72557 AAAGCAACGAAATGGCCCAATTGG 72580 || ||||| ||||| || ||||| Sbjct 1190 TAAACAACGCAATGGTCCTATTGG 1213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303141998671299