Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq24245 89.7 8e-13 >seq24245 Length=617 Score = 89.7 bits (98), Expect = 8e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 193842 GAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGG 193901 ||| | ||||| ||| |||| || || |||||||| ||||| ||||||| ||||| Sbjct 226 GAATCAACACCGTTTTATCCTCGTAGCCCGTATGGTGTCGCAAAATTGTATGCCCATTGG 285 Query 193902 ATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTGGTATTCTCTTCAAT 193961 || | | ||||||||||| || |||||| || ||| || ||||||| | || ||| Sbjct 286 ATGACGATTAATTATCGTGAATCTTATGGAATCTTTGCTTGTAGTGGTATTTTGTTTAAT 345 Query 193962 CACGAATCTCC-AAGAAGAGGTGAGACATTTGTAACTCGTAAGATTAC 194008 || |||||||| | || | || |||||| || || |||||||| Sbjct 346 CATGAATCTCCGTTGCGTGGGCGCGA-ATTTGTGACGCGCAAGATTAC 392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807300628317640