Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8878 143 3e-29 seq12789 136 5e-27 >seq8878 Length=3384 Score = 143 bits (158), Expect = 3e-29 Identities = 598/929 (64%), Gaps = 30/929 (3%) Strand=Plus/Minus Query 62901 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62960 || ||||| || || || | ||||| |||| | || | || || || || ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 62961 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63020 ||| || |||||||||||| | || | ||||| ||||| || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGGTCTTTG 1903 Query 63021 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63080 || || ||| | ||| | ||||||||||| || | || ||||| || | |||||| | Sbjct 1902 TAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTTT 1843 Query 63081 CGAGCCTTTATTATAGATTTGTATC----TCCTTTCTCTTTCGTATAGTGTATACAATCG 63136 ||||||| || || |||| | ||||| ||||| | || | || | Sbjct 1842 TGAGCCTTCAT---AGTTTTGCGGCCAAGTCCTTGCTCTT-CATACTTTTGGTAGAGAGC 1787 Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCA-ATCCAGGACATTCATCCGGACACATCAACG 63195 ||| ||||| || || |||| | | | | || | | ||||| ||||| | | | Sbjct 1786 TTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGC-TTCATTGGGACAGAAAAGAG 1728 Query 63196 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAA 63255 ||| ||||| | || | |||| ||||| || | |||||||| ||| ||| | || | Sbjct 1727 TCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGA 1668 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | | || | | || || || || || || ||||||| | | | ||| | | | Sbjct 1667 ACAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAA 1608 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT--AACTCCAGGCCGTT-TGTTTC 63372 ||||||| ||||| ||||| | || ||||| | ||| || || | |||| Sbjct 1607 AGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAAC------CCTTTCTCTTTC 1554 Query 63373 C---TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63429 | |||||| |||| ||||| || || | ||| | ||||| | ||| |||| | | Sbjct 1553 CACCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTC 1494 Query 63430 CGTTTGA-TATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 63488 | ||||| ||| ||||||||||| || |||||||| | || | || || || | Sbjct 1493 CATTTGAGTAT-CCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAACT 1435 Query 63489 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT--AACGTGTCAT 63546 | || |||| ||| || || | ||||| || | ||| |||| | | || || | Sbjct 1434 GCAAGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTA--CGTTCTTGAGAGTATCGT 1377 Query 63547 AGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 63606 ||||||| | || || || |||| | || | |||||| |||||| | Sbjct 1376 AGATACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGGCT 1317 Query 63607 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 63666 || || || || || | || || | ||| || || ||||| || | | Sbjct 1316 TGGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGA 1257 Query 63667 GATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGC 63725 | || || |||||||| |||||||| | ||| | ||| || |||||||||| ||| | Sbjct 1256 GGTTATAAGTCTCAATGGCTGAGTCAACATCTTCCTTG-TGGATTCCTACTGAGACTCTG 1198 Query 63726 ATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTT 63785 | | ||||||||| |||||||||||||||||| ||| | ||| | ||||||||| Sbjct 1197 AGGAGCATGTGCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGCGC 1138 Query 63786 TCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 || | || || || || || |||| ||| Sbjct 1137 TCAAGGGTCTTGAATCCGAAGTAGTCGTA 1109 >seq12789 Length=2278 Score = 136 bits (150), Expect = 5e-27 Identities = 397/601 (66%), Gaps = 14/601 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||| ||||| |||||| || | || | |||||||| || || || Sbjct 772 CAAGCGAAGTCGGTGTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGG 831 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| |||||||| || || ||||| || ||||| ||| || || || |||||| Sbjct 832 CCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAG 891 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT-GT-- 33480 || || || || || || ||||||| ||||||||| | | |||||||| | || Sbjct 892 ATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCGGCGAA---GGCGCTGTGGTCGTTG 948 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| |||||||||| |||||||| | || || || || | | || || Sbjct 949 ATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGACGGGGATGTTTGCAGTAGCCTTG 1008 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACA 33598 ||||| | | ||| |||| | ||| | || || ||||||||| || || Sbjct 1009 AAGAGGAACTCTTTCTCATGAGGGTCTG--AGATGAGGGTATCGATCAGGAGTGAGTAGG 1066 Query 33599 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33658 | || || || ||||| || || ||| || || || ||||| || | |||||||| | Sbjct 1067 TCTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATAGAAGCAGCGAGCCTCGGGCA 1126 Query 33659 TCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTG 33718 ||| | || || || || | || | || || || || || ||||| ||| | Sbjct 1127 CCTGAATCTCAGTGCAGAACTTCTGGGCGAGGTTCTCGTTGACGATACCGTCGGAGGCAG 1186 Query 33719 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA-GTTTATTCCAA 33777 | || || || | || || || | ||| | ||||||| || ||| | | ||| Sbjct 1187 CGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGT-TGTCATTAAGGCGCTCCCAG 1245 Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCTT 33836 || || | ||| | | | || | ||| || |||||| |||| ||| |||| | Sbjct 1246 TCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAGAATGCAGCCATCTGG-TC 1304 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 || ||||| ||||||||||| | || | ||| |||| || ||||| | || || || Sbjct 1305 CTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAGGATGACAAAGCGGTTAGGGTT 1364 Query 33897 T 33897 | Sbjct 1365 T 1365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622750823682040