Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq18359 159 3e-34 seq7630 138 1e-27 seq7629 91.5 1e-13 seq20592 84.2 2e-11 >seq18359 Length=859 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | |||||||| || | || ||||| | ||||| |||| | ||| | Sbjct 554 AATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTC 495 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||||| | || ||| ||||| |||||||| || || || |||||||| Sbjct 494 CGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 435 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| ||||| || | | ||| || | || ||||||| ||||| ||||||||||||| Sbjct 434 ACAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAA 375 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| || |||||| |||| || ||||| ||||| ||||| || Sbjct 374 CATTCAAAAGGAGTCTACTCTCCACCTAGTCCTCAGACTCAGAGGTGG 327 Score = 116 bits (128), Expect = 4e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| || || ||||| || || || || ||||||||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAA 662 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||| |||| || ||| || ||||| ||||| | |||| | | |||||||| ||| Sbjct 661 CAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAAC 602 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || || || ||| | ||| |||| || ||| | |||||||||| Sbjct 601 ATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGGAA 553 >seq7630 Length=872 Score = 138 bits (152), Expect = 1e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 26760 TCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTA 26819 |||||||| |||||| | || || || || | || ||||| | |||||| | || | Sbjct 733 TCAAACAACATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTT 674 Query 26820 GAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCT 26879 || || ||||||||||||| | ||||| ||||| ||||| || || || || Sbjct 673 GAGCCATCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCA 614 Query 26880 CCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC 26939 ||||| ||||| |||||||| | | ||||| ||||| ||||| | |||| | ||||| Sbjct 613 CCCGACCAACAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGC 554 Query 26940 GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || || ||||| | || |||| || |||||||||||||| Sbjct 553 GATTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCAGACTTAGAGGAGG 498 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||||||| | || || ||||| ||||| ||||| || || ||||||||| Sbjct 436 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAA 377 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||||| || | || ||||| || || ||||| | |||| | ||||| ||| Sbjct 376 CAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAAC 317 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || |||| ||||||||||||| ||||| || Sbjct 316 ATTCAGAAGGAGTCAACCCTCCACTTGGTCCTGAGACTCAGAGGTGG 270 >seq7629 Length=3052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||| | | || || || || || ||||| || | |||||| | || | || | Sbjct 2951 AAAATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCCT 2892 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | || || |||||| ||||| ||||| || ||||| ||| Sbjct 2891 TCCGACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGAT 2832 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| |||||||| | | || || | | ||||| | ||||| | | || || Sbjct 2831 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTAC 2772 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| || || || |||| |||| || ||||| ||||| || Sbjct 2771 AACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCAGACTCAGAGGTGG 2722 >seq20592 Length=348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 122/171 (71%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 ||||||| ||| || | || || |||||| | ||||| ||| | || ||| | || | | Sbjct 179 AAACAAACATGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTG 120 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 | || || |||||||| | ||||| ||||| ||||| ||||| || || | Sbjct 119 AGCCATCAGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCAC 60 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA 26931 |||||||||||||| | || | || || |||||| | ||||| | ||||| Sbjct 59 CCGATCAACAAAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGTAGAA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478511507661680