Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8878 201 3e-46 >seq8878 Length=3384 Score = 201 bits (222), Expect = 3e-46 Identities = 859/1335 (64%), Gaps = 23/1335 (2%) Strand=Plus/Plus Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCC 363558 |||||||| | || ||||| || ||||| || | || | ||| ||||| || || Sbjct 1226 GATGTTGACTCAGCCATTGAGACTTATAACCTCATGAGCGACCGTTGGTTCACTCATGCT 1285 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT-CT 363617 || || || | | ||| ||||| || | || || || ||| || || |||||| || Sbjct 1286 ACACCCACTCTCTTCAACGCTGGTACCCCCAAGCCTCAAATGAGCTCCTG-TTTCTTGCT 1344 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTAT 363677 | ||||||||||| || ||| | ||||||| || || || ||||| || || || Sbjct 1345 CATGATGAAGGACGACTCTATCCACGGTATCTACGATACTCTCAAGAACGTAGCACTCAT 1404 Query 363678 TTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTT 363736 ||| |||| ||| || ||| | || | | | ||||| | | || |||| | || | Sbjct 1405 TTCTAAGAGTGCTGGTGGAGTAGGACTTGCAGTTCACAACATCAGAGCTACAGGA-AGCT 1463 Query 363737 ACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACA 363796 |||| || || |||||||| ||||| || |||||||||| | || || | Sbjct 1464 ACATAAAGGGTACCAATGGATACTCAAATGGACTCCTTCCCATGCTCAGAGTCTTCAATG 1523 Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATC 363856 | || || || || || |||||||| || |||||| | || || | ||||| || |||| Sbjct 1524 AGACAGCAAGATATGTAGACCAGGGAGGTGGAAAGAGAAAGGGTTCCTTTGCCATCTATC 1583 Query 363857 TCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAACACGGGAA-- 363913 | || || || || ||||| ||||| | ||| | | | || || || || || Sbjct 1584 TTGAACCCTGGCACGCTGATATCTTTGACTATCTCCAATTGAGAAAGAATCATGGTAAAG 1643 Query 363914 AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGA 363973 ||||| || || || ||||| ||||| | || |||||| |||| || |||| Sbjct 1644 AAGAGCAA---CGAGCTCGTGACTTGTTCATGGGTCTATGGGTTCCTGATTTGTTCATGA 1700 Query 363974 AGCGCGTGGAGGCAGGTAAGA-ATTGGTCACTCTTTTGCCCACACGAATGTCCA-GGTCT 364031 || | || | | || || | ||| | || || || || | ||| | | | ||||| Sbjct 1701 AGAGAGTCCAAG-AGAATGGAGACTGGACTCTTTTCTGTCCCAATGAA-GCCAAGGGTCT 1758 Query 364032 TTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAA 364091 || || || | || || || | || ||||| ||| ||||||||||| | | ||| Sbjct 1759 TTATGACGTTTATGGCGATGAGTTTGAAGCTCTCTACCAAAAGTATGAAGAGCAAGGACT 1818 Query 364092 GGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGA 364151 | || || || || || || || | ||| ||||| || || | || ||||| Sbjct 1819 TGGCCGCAAAACTATGAAGGCTCAAAAAGTCTGGGAGGCCATTATTGAGGCCCAAATTGA 1878 Query 364152 GACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCA 364211 || |||| || || ||| | |||||||| ||| |||||| ||| ||| || | Sbjct 1879 AACTGGAAATCCTTACATGCTCTACAAAGACCACGCCAATCGCAAGAGCAATCAGAAGAA 1938 Query 364212 CCTTGGTACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCG 364270 |||||| || | ||| || | || || ||| ||| ||||| || ||||| || | | Sbjct 1939 CCTTGGAACTA-TCAAGAGTTCTAATCTCTGTTGCGAAATTATGGAGTACACTTCTGCTG 1997 Query 364271 ACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGTA 364330 | |||| ||| || || || ||||| ||| | || || | | | ||||| Sbjct 1998 ATGAGATTGCTGTGTGCAATCTTGCCAGTATCTCACTCCCTCGCTACATCACCAATGGTG 2057 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGG 364390 ||| ||||| | | || || | || ||||||| ||| ||| || ||| Sbjct 2058 TTTTCGACCATGAAAAGCTACATTAAGTTGCCTATCAGATCACTATCAACCTGAACAGAA 2117 Query 364391 TTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCC 364450 |||| ||| || | ||||| | ||| ||| || |||||| ||| | | Sbjct 2118 TTATTGACGGAAACTTCTATCCTTGTGATGAGGCCAGAAACTCAAATATGAAACATAGAC 2177 Query 364451 CGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTG 364510 | ||||| | ||| | || || || ||||| | | ||||| | || | || | || | Sbjct 2178 CCATTGGAATAGGTATTCAAGGTCTGGCTGATGCTCTTATGCTTCTTAGAATTCCTTTCG 2237 Query 364511 A-TTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 | || || ||| | | || |||| ||||||| ||||| ||| ||| || Sbjct 2238 AGGACGAAAGA-GCTTATACATTTAACCAGGAAGTCTTTGAGACAATTTATCATGCTGCT 2296 Query 364570 ATG-ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTC 364628 ||| | || || ||||| |||||||| | | ||| | || | |||| || || Sbjct 2297 ATGCAGAGC-TCATGTGACTTGGCAAAGAAGGAAGGATACTATGAGAGTTATCCCGGCTC 2355 Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG---TCACGCCATCTGTCCG 364685 |||||| || || | ||||| |||||||| ||||| | || || | | | Sbjct 2356 TCCTCTTAGTCAAGGCCAGTTCCAATTTGATCTTTGGAACGAGAAGACTCCCACAAACAG 2415 Query 364686 ATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGT 364745 || |||||| | |||| | ||| |||| || || | ||||| ||| | Sbjct 2416 ATACGACTGGGCAAAGCTAAAGCAAGAAGTTGTACAGCACGGAGCTAGAAACTCTCTCTT 2475 Query 364746 TACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGA 364805 || ||||||||||| ||||| || | || |||||||| || |||||| |||| || Sbjct 2476 ATTGGCACCCATGCCCACTGCTTCCACCTCTCAAATCCTCGGCAATAACGAGAGCTTTGA 2535 Query 364806 ACCGTTTACAAGCAA 364820 ||| | |||| ||| Sbjct 2536 ACCCTACACAACCAA 2550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302932462421258