Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq18359 145 7e-30 seq7630 145 7e-30 seq7629 91.5 1e-13 seq20592 87.8 2e-12 seq18358 82.4 7e-11 >seq18359 Length=859 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | ||||| | || || ||| ||| | Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAG-CCATC 723 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | ||||| || || ||||| || ||||| || |||||||| Sbjct 722 TGACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCA 663 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||||||||||| || ||| |||||||| ||||| | ||||| | | ||||| || || Sbjct 662 ACAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAA 603 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||| || || || || ||||||| || | ||||| ||||||||| Sbjct 602 CATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGGA 554 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | |||||||| || | || ||||| | || || |||| ||||| || Sbjct 554 AATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTC 495 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || ||| ||||| |||||||| || || || |||||||| Sbjct 494 CGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 435 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||||| || | | ||| ||| | || ||||||| |||| ||||||| ||||| Sbjct 434 ACAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAA 375 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||| || ||||| | || |||| | ||| | ||||| || Sbjct 374 CATTCAAAAGGAGTCTACTCTCCACCTAGTCCTCAGACTCAGAGGTGG 327 >seq7630 Length=872 Score = 145 bits (160), Expect = 7e-30 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 23983 CAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||||||| |||||| | || || || || | || ||||| | || ||| | || || | Sbjct 732 CAAACAACATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTG 673 Query 24043 AGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 || | ||||||||||||| | ||||| ||||| ||||| || || || || | Sbjct 672 AGCCATCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCAC 613 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG 24162 |||| ||||||||||| || | | ||||||||||| ||||| | ||||| | |||||| Sbjct 612 CCGACCAACAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCG 553 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| ||||| || || || ||||| |||| || ||| | ||| | |||||||| Sbjct 552 ATTACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCAGACTTAGAGGAGG 498 >seq7629 Length=3052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||| | | || || || || || ||||| || | || ||| | || || ||| | Sbjct 2951 AAAATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCCT 2892 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | || || |||||| ||||| ||||| || ||||| ||| Sbjct 2891 TCCGACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGAT 2832 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||||||||| || | | || ||| | | ||||| | |||| | | ||||| Sbjct 2831 CAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTAC 2772 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| ||||| || || || | || || ||| | ||| | ||||| || Sbjct 2771 AACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCAGACTCAGAGGTGG 2722 >seq20592 Length=348 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/172 (73%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 23984 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCG 24042 ||||||| ||| || | || || |||||| | ||||| ||| | |||||| | || || | Sbjct 179 AAACAAACATGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTG 120 Query 24043 AGGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCT 24101 || ||| | || |||||||| | ||||| ||||| ||||| ||||| || || Sbjct 119 AG-CCATCAGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCA 61 Query 24102 CCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA 24153 ||||||||||| ||| |||| | || || || ||| | ||||| | |||| Sbjct 60 CCCGATCAACAAAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGTAGAA 9 >seq18358 Length=408 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/154 (73%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 23985 AACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 |||||| ||| || | || || ||||| | |||||||| | || ||| |||| || || Sbjct 253 AACAAATATGTAAATTTTCGTCAAAACCCTCACTGGAAAGACCATCACCCTCGATGTTGA 312 Query 24044 GGCCAAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTC 24102 | ||| | |||||||| || | ||||| |||||| ||||| ||||| || || | Sbjct 313 G-CCATCTGACACCATTGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCAC 371 Query 24103 CCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136 | || ||||||||||| |||| || || ||||| Sbjct 372 CTGACCAACAGAGACTCATTTTCGCTGGAAAGCA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429803856348945