Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq7630 114 1e-20 seq18359 98.7 9e-16 seq12789 96.9 3e-15 >seq7630 Length=872 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 ||||| || || | ||| |||||||| || |||||||||||||| | ||| | ||| Sbjct 513 AGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCTGCCGTCT 572 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || |||||||| || |||| | | ||| ||||| || |||||||| || ||||| Sbjct 573 TCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCT 632 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || ||||| | ||| | || |||| | ||| | ||| | ||| | ||| Sbjct 633 TGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACGTCCAAGGTGATGGTC 692 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || ||||| || || || ||||| || |||||| Sbjct 693 TTTCCGGTAAGGGTCTTAACGAAGATTTGCATG 725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 170/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 130987 GACGATCACTTTCACCATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCC 131046 || ||| |||||||| ||| ||||| | | | ||| || || || | ||| |||||| Sbjct 252 GATGATGACTTTCAC--TGA-CCACCTCTGAGTCTCAGGACCAAGTGGAGGGTTGACTCC 308 Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 || ||||||||||| || | || | ||| || ||||||||||||||| |||| Sbjct 309 TTCTGAATGTTGTAGTCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATA 368 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCC 131166 | | || || || || || || ||||| ||||| ||| || ||| | | ||| Sbjct 369 AGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCG 428 Query 131167 ACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 | ||||| | || ||| | || | || | ||| || ||||| || || || ||||| Sbjct 429 ATGGTATCTGAGGGCTCAACATCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAG 488 Query 131227 ATCTGCAT 131234 || ||||| Sbjct 489 ATTTGCAT 496 >seq18359 Length=859 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || ||||| | || |||||||| ||||||||||| ||||| | ||| | ||| Sbjct 570 AGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCCGTCT 629 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || ||||| || ||| | || | | ||| || || || ||||| || || ||||| Sbjct 630 TCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTTGTCC 689 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 |||||| ||||| | ||| | || || | | ||| | ||| | |||| ||| Sbjct 690 TGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTAATGGTC 749 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || || || |||||||| ||||| Sbjct 750 TTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||||||||||||||| || ||||| | || | || || |||| ||| || Sbjct 357 GTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCAAGCTACTTTCCG 416 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | | ||| || || || |||||||| |||||||| ||| || || Sbjct 417 GCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTC 476 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | || |||| || |||| ||||| || | || || ||||| ||||| Sbjct 477 ACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTTCCGGTGAGAGTC 536 Query 131218 TTTACGAAAATCTGCAT 131234 ||||| ||||| ||||| Sbjct 537 TTTACAAAAATTTGCAT 553 >seq12789 Length=2278 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 46123 TGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAG 46182 ||||||||| | ||| ||| ||| ||||||| | | || ||||| || ||||||| Sbjct 953 TGGATCAACGAC--CACAGCGCCTT-CGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAG 897 Query 46183 GGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATG 46242 ||| |||| || || ||| ||| | ||||||| | |||| | ||| ||||| Sbjct 896 GGCATCTTCTTCTCCGGCTCTTTCTGCTCCATCTTCTGGCTCAAGAAACGTGGCCTCATG 837 Query 46243 CCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTT 46302 ||||||||||| || ||||||| |||| || || || ||||| |||| || ||||| Sbjct 836 CCCGGCCTGACCTTCTCCAACGAGTTGATCTCCCGTGATGAGGGTATGCACACCGACTTC 777 Query 46303 GCGTGTCTCTACTATAA 46319 || || ||| ||| || Sbjct 776 GCTTGCCTCCTCTACAA 760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471864003864960