Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8878 143 3e-29 seq2561 134 2e-26 seq12789 129 7e-25 >seq8878 Length=3384 Score = 143 bits (158), Expect = 3e-29 Identities = 596/928 (64%), Gaps = 28/928 (3%) Strand=Plus/Minus Query 62756 GCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 62815 || ||||| || || || | ||||| |||| | || | || || || || ||| Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 62816 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 62875 ||| || |||||| ||||| | || | ||||| ||||| || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGGTCTTTG 1903 Query 62876 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 62935 || || ||| | ||| | ||||||||||| || | || ||||| || | |||||| | Sbjct 1902 TAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTTT 1843 Query 62936 CGAGCCTTTATTATAGATTTGTATC----TCTTTTCTCTTTCGTATAGTGTATACAATCG 62991 ||||||| || || |||| | || || ||||| | || | || | Sbjct 1842 TGAGCCTTCAT---AGTTTTGCGGCCAAGTCCTTGCTCTT-CATACTTTTGGTAGAGAGC 1787 Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||| ||||| || || |||| | | || || ||||| ||||| | | | Sbjct 1786 TTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGCTTCATTGGGACAGAAAAGAGT 1727 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111 ||| ||||| | || | |||| ||||| || | |||||||| ||| ||| | || || Sbjct 1726 CCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGAA 1667 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 | || | | || || || || || || ||||||| | | | ||| | | | Sbjct 1666 CAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAAA 1607 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCAT--AACTCCAGGCCGTT-TGTTTCC 63228 ||||||| ||||| ||||| | || ||||| | ||| || || | ||||| Sbjct 1606 GATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAAC------CCTTTCTCTTTCC 1553 Query 63229 ---TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| |||| ||||| || || | ||| | ||||| | ||| |||| | || Sbjct 1552 ACCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCC 1493 Query 63286 ATTGGATGTA-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTG 63344 ||| || ||| |||||||| || || |||||||| | || | || || || || Sbjct 1492 ATTTGA-GTATCCATTGGTACCCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGAACTG 1434 Query 63345 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT--AACGTATCATA 63402 || |||| ||| || || | ||||| || | ||| |||| | | ||||| || Sbjct 1433 CAAGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTA--CGTTCTTGAGAGTATCGTA 1376 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462 ||| || | ||| || ||| |||| | || | |||||| |||||| | Sbjct 1375 GATACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAGGCTT 1316 Query 63463 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAG 63522 || || || || || | || || | ||| ||||| ||||| || | || Sbjct 1315 GGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGAG 1256 Query 63523 ATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCA 63581 || || |||||||| |||||||| | ||| | ||| || |||||||||| ||| | | Sbjct 1255 GTTATAAGTCTCAATGGCTGAGTCAACATCTTCCTTG-TGGATTCCTACTGAGACTCTGA 1197 Query 63582 TTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTT 63641 | ||||||||| |||||||||||||||||| ||| | ||| | ||||||||| | Sbjct 1196 GGAGCATGTGCTGGGGTCTTTCAACGATCTTGCCGTTGACTTTGAGCAAGTAGGAGCGCT 1137 Query 63642 CCAAAGTTTTAAAACCAAAATAGTTGTA 63669 | | || || || || || |||| ||| Sbjct 1136 CAAGGGTCTTGAATCCGAAGTAGTCGTA 1109 >seq2561 Length=3495 Score = 134 bits (148), Expect = 2e-26 Identities = 519/796 (65%), Gaps = 32/796 (4%) Strand=Plus/Plus Query 62540 TCAAATGGATAATTTAAGAGAATAAAC-GCGTCTGCTAATCCTTGAACACCAATACCGAT 62598 ||||||||| | ||| || | |||| || || || || ||||| ||||| || || || Sbjct 1419 TCAAATGGA-ATTTTGAGCAATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAAT 1477 Query 62599 AGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTAT 62658 |||||| || | ||| ||| | ||| || | | ||||| ||||| ||||||| Sbjct 1478 AGGTCTGTGCTTAAGATTTGAGTTACGAGCCTCAGCGACTGGATAGTAATTGTTATCTAT 1537 Query 62659 AATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62718 ||||||||| ||||| | ||| || ||| | | |||||| | | || | Sbjct 1538 AATTTTATTTAGATTCTTAGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTA 1597 Query 62719 TC---GCCCATC--TATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGC 62772 | || | || | || || || | || | |||| ||| || ||||| || || || Sbjct 1598 TTCTTGCTCCTCCTTCTTGACGAATCTATTGAGAGCAATAGAGGCAAGATTGCACACAGC 1657 Query 62773 TACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 62832 || |||| || | | | | || ||||||||||||||||| | ||| ||||| Sbjct 1658 TATTTCATCAGGACTTGTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGT 1717 Query 62833 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGT 62892 ||||| |||| | || |||| | || || ||||| || || || ||| | ||||| Sbjct 1718 TCCTAGGTTTTACTAGTTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGT 1777 Query 62893 ACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGA 62952 ||||| ||||| ||||| |||| ||| | ||| | ||| |||| | |||| Sbjct 1778 TCCAGTCTCAATTTGAGACTCTACTATCTGTCCCCAAAGCCATCGGGCCT---TAATAGT 1834 Query 62953 TTTGTATCTCTTTTCTCTTTCGT--ATAGT----GTATACAATCGTTCGAACTCGTCTCC 63006 ||| | | || | ||| ||| | ||| | | ||| || || ||||| Sbjct 1835 CTTGCGAC-CGCGTCCAGTGCGTTCATACTCCTCGTAGAGCTT--TTCAAATTCTTCTCC 1891 Query 63007 CCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63066 |||| || || || || || || | |||||||| | | ||| ||| ||| | Sbjct 1892 CCAAGTGGTGGTGAGGCCTGGGCACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTG 1951 Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTC 63125 || |||| | ||| || | ||||||||||| ||||| || || || || | | || Sbjct 1952 CTCAACTCTTCGCATGAACAAGTCAGGAATCCAGAGAGCGTAGAACAAG-TCACGAGCTC 2010 Query 63126 TATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATA-ATATCAGAA 63181 ||| || || || || | |||||| || | |||||| | |||| || ||| Sbjct 2011 TATTCTCTTCCTTACC---GTGGTTTTTACGCAGCTGGAGGAA-GTCATAGATGTCACTG 2066 Query 63182 TGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 63241 ||||| || || | || | ||| | | | || | |||| || |||||||||| | Sbjct 2067 TGCCATGGCTCTACATAGACGGCGAAAGCACCTTTTCTTTTGCCGCCACCCTGATCTACG 2126 Query 63242 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA-CCATT 63300 ||||| ||||||| ||| | || | | ||| ||||| | || ||||| ||| ||||| Sbjct 2127 TATCTTGCGGTGTCATTGAAGACCTTAAGCATAGGAATGAGTCCGTTGGA-GTATCCATT 2185 Query 63301 GGTCCCTGAGATATAG 63316 || ||| ||||||| Sbjct 2186 TGTACCTCTGATATAG 2201 >seq12789 Length=2278 Score = 129 bits (142), Expect = 7e-25 Identities = 398/603 (66%), Gaps = 16/603 (3%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || ||||| ||| ||| | |||||| || | || || |||||||| || || || Sbjct 772 CAAGCGAAGTCGGTGTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGG 831 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 |||||||| |||||||| || || ||||| || ||||| ||| || || || || ||||| Sbjct 832 CCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 890 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT-GT- 32837 || || || || || || ||||||| ||||||||| | | |||||||| | || Sbjct 891 GATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCGGCGAA---GGCGCTGTGGTCGTT 947 Query 32838 -ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896 ||||| |||||||||| |||||||| | || || || | | |||| || Sbjct 948 GATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGACGGGGATGTTTGCAGTAGCCTT 1007 Query 32897 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 32956 ||||| | | ||| |||| | ||| | ||||| |||| || || | Sbjct 1008 GAAGAGGAACTCTTTCTCATGAGGGTCTGAGATGAGGGTATCGATCAGGAGTGAGTAGGT 1067 Query 32957 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAAT 33016 || || || ||||| || || |||||| || || |||||||| | |||||||| | Sbjct 1068 CTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATAGAAGCAGCGAGCCTCGGGCAC 1127 Query 33017 CTGTACTTCTGTACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCGTCACTGGCT 33074 ||| | || || || || ||||| | | || || || || || ||||| ||| Sbjct 1128 CTGAATCTCAGTGCAGAAC--TTCTGGGCGAGGTTCTCGTTGACGATACCGTCGGAGGCA 1185 Query 33075 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA-GTTTATTCCA 33133 || || || || | || || || | ||| | ||||||| || ||| | | ||| Sbjct 1186 GCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGT-TGTCATTAAGGCGCTCCCA 1244 Query 33134 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC-TCTGCCT 33192 || || | ||| | | | || | ||| || |||||| |||| ||| |||| | Sbjct 1245 GTCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAGAATGCAGCCATCTGG-T 1303 Query 33193 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 33252 || ||||| ||||||||||| | || | || || | || ||||| | || || | Sbjct 1304 CCTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAGGATGACAAAGCGGTTAGGGT 1363 Query 33253 TTT 33255 ||| Sbjct 1364 TTT 1366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633432255432400