Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq18359 127 2e-24 seq7629 116 3e-21 >seq18359 Length=859 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||||||| | ||||| || | |||||| |||| || || | || Sbjct 554 AATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTC 495 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| |||||| |||| || ||| |||||||| || || ||||| || || Sbjct 494 CGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 435 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | |||| |||||||| || | | ||||||| | | ||| | |||| || || Sbjct 434 ACAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAA 375 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| || || || || || |||| || || || ||||| || Sbjct 374 CATTCAAAAGGAGTCTACTCTCCACCTAGTCCTCAGACTCAGAGGTGG 327 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || |||| || | || || ||| | ||| Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCT 722 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| |||||| ||||| || || || ||||| || ||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAA 662 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | ||||| ||||| || ||| | ||||| | | || | |||| ||||| Sbjct 661 CAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAAC 602 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || ||||| || ||||| || || || |||||||||||| Sbjct 601 ATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGGAA 553 >seq7629 Length=3052 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||| | || || || ||||||||||| ||||| | ||||| | || |||||| Sbjct 2953 GAAAAATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGC 2894 Query 25054 CGTCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | || ||||| ||||| |||| || || | ||| ||||| ||||| || || ||| Sbjct 2893 CTTCCGACACCATCGAAAACGTGAAGGCCAAGATTCA-GGACAAGGAAGGTATCCCTCCT 2835 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || |||||| | | || ||||| || || | || ||||| | | | || || ||| Sbjct 2834 GATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGAT 2775 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||| || ||||| || || || ||||| || || ||||| || Sbjct 2774 TACAACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCAGACTCAGAGGTGG 2722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433194813795485