Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12789 127 2e-24 >seq12789 Length=2278 Score = 127 bits (140), Expect = 2e-24 Identities = 404/616 (66%), Gaps = 13/616 (2%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||||| | | ||| || |||||||| || | ||| || || || || |||||||| ||| Sbjct 760 TTGTAGAGGAGGCAAGCGAAGTCGGTGTGCATACCCTCATCACGGGAGATCAACTCGTTG 819 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACT 93198 ||| || | || || | || || |||||||||||||| || | || |||| ||| Sbjct 820 GAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGA-TGGAGCAGAAAGA 878 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 || || || || || || ||||| ||||| || || |||| | ||||| || || Sbjct 879 GCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCGGCGAA---GGC 935 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAAT-AC-AAGGTAGT 93316 | | | ||||||| | ||||||||| || |||||| | || | || | Sbjct 936 GCTGTGGTCGTTGATCCAGCGGAGAGCCCAATCAGC---CTTCTTAGTGACGACGGGGAT 992 Query 93317 GTTT-CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGAT 93375 |||| | |||| || || ||| | ||| ||| | | ||| ||| |||||||| Sbjct 993 GTTTGCAGTAGCCTTGAAGAGGAACTCTTTCTCATGAGGGTCTGAGATGAGGGTATCGAT 1052 Query 93376 TAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 | || || || | || || |||| |||||||| |||||||| || ||||| || Sbjct 1053 CAGGAGTGAGTAGGTCTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATAGAAGCA 1112 Query 93436 TCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTAT 93495 | ||| || | | ||| | || | || ||| |||| || || ||||| || Sbjct 1113 GCGAGCCTCGGGCACCTGAATCTCAGTGCAGAACTTCTGGGCGAGGTTCTCGTTGACGAT 1172 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||| ||||| || || || || || | | ||||| | ||| || || || | || || Sbjct 1173 ACCGTCGGAGGCAGCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGTTGTCATT 1232 Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACG- 93614 ||| ||||| || | ||| | | || |||| ||| || ||||| || | Sbjct 1233 AAGGCGCTCCCAGTCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAGAATGC 1292 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAA 93674 | | |||| | |||||||| | ||| ||||| | || | || || | ||||||| Sbjct 1293 AGCCATCTG-GTCCTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAGGATGACAA 1351 Query 93675 AACGATTAGGGTTATC 93690 | || |||||||| || Sbjct 1352 AGCGGTTAGGGTTTTC 1367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556685256593560