Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq18359 116 3e-21 seq7630 102 7e-17 seq7629 100 2e-16 seq20592 84.2 2e-11 >seq18359 Length=859 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | ||||| || || |||| || || || ||| || || Sbjct 553 ATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTCC 494 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| || || |||||||| ||||| || |||||||||||| Sbjct 493 GACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAA 434 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| |||||||| || || | || ||| | || || ||| || ||| Sbjct 433 CAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAAC 374 Query 22399 ATTCAAAAAGAATCCAC 22415 |||||||| || || || Sbjct 373 ATTCAAAAGGAGTCTAC 357 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | ||||| || || | ||| | || || || | | Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCT 722 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||||| || ||||||||||| || |||||||||||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAA 662 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || || | || || | | ||| | ||| |||||| Sbjct 661 CAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAAC 602 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||| | ||||| ||| | |||| | ||||| Sbjct 601 ATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGG 555 >seq7630 Length=872 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||||||||| || || || | Sbjct 496 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCA 437 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || |||||||| |||||||| ||||||||| Sbjct 436 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAA 377 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || || ||||| ||| | || || | || | || || |||||| Sbjct 376 CAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAAC 317 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || ||| | || || || Sbjct 316 ATTCAGAAGGAGTCAACCCTCCACTTGGT 288 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || ||||| || | ||||| || || |||| | || || || | Sbjct 727 AACATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGAGCCA 668 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || || |||| || || |||||||||||||| || |||||||| Sbjct 667 TCCGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGAC 608 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| | || || ||||| ||||| || | || || | | ||| || ||||||| Sbjct 607 CAACAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCGATTAC 548 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || || ||| | || || || Sbjct 547 AACATCCAGAAGGAGTCTACCCTTCACTTGGT 516 >seq7629 Length=3052 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| | || || || || ||||| || ||||| || |||| ||||| ||||| | Sbjct 2952 AAAAATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCC 2893 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||| ||| | || | | || || ||||| |||||||| ||||| || || || Sbjct 2892 TTCCGACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGA 2833 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| | || || ||||| || || |||| || || | ||| | || ||||| Sbjct 2832 TCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTA 2773 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||| ||||| || |||||| | || || || Sbjct 2772 CAACATCCAAAAGGAGTCCACCCTCCACTTGGT 2740 >seq20592 Length=348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| |||| || |||||||| | || |||||||| | || | || || || | Sbjct 175 AAACATGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTGAGCC 116 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | |||||| | || || |||| || || ||||||||||| ||||| |||||||| Sbjct 115 ATCAGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCCGA 56 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 ||||||| | | || || || || ||||| || || || Sbjct 55 TCAACAAAGATTGATCTTCGCTGGTAAACAATTGGAAGA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419598993844735