Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq7630 197 3e-45 seq18359 170 4e-37 seq7629 167 4e-36 seq18358 143 5e-29 seq20592 138 2e-27 seq12789 123 5e-23 >seq7630 Length=872 Score = 197 bits (218), Expect = 3e-45 Identities = 180/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| | | |||||||| || || ||||| || |||||||| |||||| | Sbjct 498 CCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 557 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || || ||||| | ||||| || || || |||||||| |||||||||||||| Sbjct 558 AGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGG 617 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 618 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACG 677 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| ||||| || |||||||| ||||| || ||||| Sbjct 678 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCAT 724 Score = 179 bits (198), Expect = 7e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || ||||| || || ||||| || || || || || || || ||||| Sbjct 288 ACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTTCCGTCTTCA 347 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || ||||||||||| ||||| ||||| ||||||||||| || Sbjct 348 AGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTGG 407 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| ||||||||| |||| | || || || | |||||||| || Sbjct 408 ATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGAGTGATGGTCTTG 467 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| || ||||| Sbjct 468 CCGGTGAGGGTCTTGACGAAGATTTGCAT 496 >seq18359 Length=859 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || |||||||| || || ||||| || ||| | || || || ||||| Sbjct 573 ACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCCGTCTTCA 632 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| |||||||| || ||||| ||||| |||||||| ||||| |||||||| || Sbjct 633 AGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTTGTCCTGG 692 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||||||| ||| |||||||| | || || || ||||| || ||||| ||| Sbjct 693 ATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTAATGGTCTTT 752 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| || ||||| Sbjct 753 CCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Score = 154 bits (170), Expect = 3e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || || ||||| ||||| |||||||| ||| ||| || || |||||||| | || Sbjct 350 GTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCAAGCTA 409 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| ||||| || || ||||| ||||| |||||||| || || || |||||||| ||||| Sbjct 410 CTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTT 469 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || || || |||||||||||| | | ||| || || | ||||| || ||||| || Sbjct 470 GGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTTCCGGT 529 Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462 ||| ||||| || || || |||||| Sbjct 530 GAGAGTCTTTACAAAAATTTGCATT 554 >seq7629 Length=3052 Score = 167 bits (184), Expect = 4e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || |||||||| ||||||||||| ||||| || | || || || ||||| Sbjct 2740 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTTCTACCGTCTTCC 2799 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||| ||| || || || |||||||| ||||| || || || || ||||||||||| ||| Sbjct 2800 AACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCTTCCTTGTCCTGA 2859 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| ||||||||||| | | || || || | |||||| || || Sbjct 2860 ATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGGGTGATAGTCTTA 2919 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | ||||||||||| |||| |||| Sbjct 2920 CCAGTCAAAGTCTTGACGAAGATCTACATT 2949 >seq18358 Length=408 Score = 143 bits (158), Expect = 5e-29 Identities = 121/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || ||||| |||||||| |||||||| ||||| || ||||||||||| ||| Sbjct 408 AACTGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGA 349 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| || |||||||| | || || || || | ||||||||| ||| Sbjct 348 ATCTTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAACATCGAGGGTGATGGTCTTT 289 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| |||||||| || | ||| Sbjct 288 CCAGTGAGGGTTTTGACGAAAATTTACAT 260 >seq20592 Length=348 Score = 138 bits (152), Expect = 2e-27 Identities = 133/171 (78%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 |||||| || || || ||||| || || || || ||||| || | ||||||||| ||||| Sbjct 1 GGAGAGGGTTCTACCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGG 60 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTC 68410 ||| || |||||||||||||| ||||| |||||||| |||||||| |||| || || Sbjct 61 TGGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTC 120 Query 68411 TACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || ||||| || ||||| || || ||||| || | ||| Sbjct 121 AACGTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTAACGAAGATTTACAT 171 >seq12789 Length=2278 Score = 123 bits (136), Expect = 5e-23 Identities = 344/520 (66%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 9895 AGAAGTCTGCGTCAATTGCAAACACGTTGTCGTC---GGCATTCATGACGCCCGCCTTCT 9951 ||||||| ||||| | | || || ||||| || || | | | ||| ||||| | Sbjct 425 AGAAGTCGGCGTCGAGAGTGAAAACCTTGTCTTCCTTGGTCTGCTTAACGTTAGCCTTTT 484 Query 9952 GGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCA 10011 ||||||| || || |||||||||||||| |||||| |||||||| | |||| Sbjct 485 GGTACTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGTTAGGGAAATCATGTCCA 544 Query 10012 TGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGC 10071 | | || |||||||| || | | | || ||| ||||| || || | || Sbjct 545 TCCATTCGAAGGGGTTTTCAACCTGGTAGTATTTAGGGACTCCGAGGGCGAAGAGGAGGC 604 Query 10072 GGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCGGC 10131 |||| ||||||||| ||| ||||| ||||| || | |||||||| || || | || | Sbjct 605 GGTCTGCCACGAACATGATATACTGACTCATGAGCTTGGAGTTCATTCCGATGA-GCTCC 663 Query 10132 AG-GGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCCTCGACGATGCTC 10190 | |||| | ||||| | ||| || ||| |||| || || | || ||| ||| Sbjct 664 ACTGGGAGAGACTCGCACACGAACTCGAGCTCGATGGCAACTGCGTTGGTGATGAT-CTC 722 Query 10191 TTTACCACGT-CAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAACTG 10249 | ||| | || | |||||| | || | | || ||||| | || | Sbjct 723 GATGATGCGTTCGTTTGAGATCTTGTTGTTGATGTGCTTGTAGAGGAGGCAAGCGAAGTC 782 Query 10250 CTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAG 10309 ||| | ||||| || ||| ||| ||||||||||| || ||| ||||||||||| Sbjct 783 GGTGTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAG 842 Query 10310 CCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCC 10367 || || || |||||||| |||| |||||| || ||||||| |||||| |||||| Sbjct 843 GCCACGTTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGA--AGAAGATGCCCTCC 900 Query 10368 ACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGT 10407 || | |||| || || | ||| ||||||| || || Sbjct 901 ACAGCTGCGAAGGCAACAAGTCTCTCGGCGAAGGCGCTGT 940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921331870058680