Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq18359 118 9e-22 seq7630 102 7e-17 seq7629 82.4 6e-11 >seq18359 Length=859 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||| | |||| || | ||||| || ||||||||||| || ||||| | ||| | | Sbjct 336 AGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTA 395 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||||||||| | || || || |||| || | |||||| || || || || || ||| Sbjct 396 CCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCT 455 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| ||| | | || | |||||||| || ||||||||| | || Sbjct 456 TTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTG 515 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || ||||| ||||| ||||||||||| ||||| Sbjct 516 ATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCAT 553 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || | || ||| | ||| ||||| | || || || || ||||||||||| ||| Sbjct 552 ATTCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCG 611 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || | ||||||||||| || || ||| | || || | |||||| || || Sbjct 612 CTTAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGT 671 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| || || || | | |||| |||||| | | || Sbjct 672 GGGATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCA 731 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||||| || | || || ||||| || || || || ||||| ||||| Sbjct 732 ACGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq7630 Length=872 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | ||||| | || || || | ||||| || || || |||||||||||| Sbjct 495 ATACCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCG 554 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | || | ||||||||||| || ||||| ||||||| | ||||||||| || Sbjct 555 CTGAGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGT 614 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | |||||||| | || Sbjct 615 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCA 674 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||||||| ||| | || || ||||| || || || || || || |||||| Sbjct 675 ACGTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATG 725 >seq7629 Length=3052 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/231 (68%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGT---AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC 114211 |||||||| | ||||| | || || || | || || || ||||| ||||||||||| Sbjct 2718 ACCGCCACCTCTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATC 2777 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 || || | | ||||| | | || ||||| ||||||| | |||||| || || Sbjct 2778 AGACAAGGTTCTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGG 2837 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||| || ||||| ||||| |||||| || | | ||| | |||||||| | || Sbjct 2838 AGGGATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTC 2897 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || |||| ||| || || || |||| ||| Sbjct 2898 CACATCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACAT 2948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420005268935028