Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq12789 221 2e-52 >seq12789 Length=2278 Score = 221 bits (244), Expect = 2e-52 Identities = 584/876 (67%), Gaps = 38/876 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTT--CTCCAA-CTGGACC 42341 ||| || || | ||||||||| ||||||||| | ||| | || || |||||| Sbjct 1337 ATCAAGTACAACGACATCTGGAAAATGTACAAGGAC---CAGATGGCTGCATTCTGGACA 1281 Query 42342 GCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 | ||||| || ||||| |||| || | ||||||| || ||| |||||| Sbjct 1280 TCTGAGGAAATCGACCTCGCCACCGATGTTAAGGACTGGGAGCGCCTTAATGACAACGAA 1221 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 ||| || |||| || | || ||||||||||| ||||| ||||| || ||||| ||| Sbjct 1220 AAGCACTTTGTCAAGCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGTATCGTCAACGAG 1161 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||||| ||| | |||| | ||| | ||| ||||| ||||||||||| || Sbjct 1160 AACCTCGCCCAGAAGTTCTGCACTGAGATTCAGGTGCCCGAGGCTCGCTGCTTCTATGGT 1101 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 ||||| || || |||||| | ||||| ||| ||| | ||| || | || | Sbjct 1100 TTCCAAATGATGATGGAGAACATCCACTCCGAGACCTACTCACTCCTGATCGATACCCTC 1041 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGG--CTGTTCAAGGCCA-TGGAGACGATGCCCTGC 42638 ||| || || || | | || | || |||||||| | || | || || ||| | Sbjct 1040 ATCTCAGACCC--TCATGAGAAAGAGTTCCTCTTCAAGGCTACTGCAAAC-ATCCCCGTC 984 Query 42639 ATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACG--TTC 42695 ||| |||||||| || ||||| ||| ||||||| | |||| || || ||| Sbjct 983 GTCACTAAGAAGGCTGATTGGGCTCTCCGCTGGATCAA------CGACCACAGCGCCTTC 930 Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 | |||||| || || ||||| | || || ||||||||||||||||| ||| | ||| | Sbjct 929 GCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTTTCTGC 870 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGAACGAAC 42813 |||||||||||||||||| || ||| | |||||||| || |||||||| ||||| Sbjct 869 TCCATCTTCTGGCTCAAG--AAACGTGGCCTCATGCCCGGCCTGACCTTCTCCAACGAGT 812 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | ||| | | || ||||| |||| | ||||| || ||||||| ||| | ||| Sbjct 811 TGATCTCCCGTGATGAGGGTATGCACACCGACTTCGCTTGCCTCC---TCTACAAGCACA 755 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 ||| ||||| ||| || || || || | |||||||| | || || | |||| Sbjct 754 TCAACAACAAGATCTCAAACGAACGCATCATCGAGATCATCACCAACGCAGTTGCCATCG 695 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 || |||||| | |||| || || ||| || |||| |||||| | | |||| Sbjct 694 AGCTCGAGTTCGTGTGCGAGTCTCTCCCAGTGGAGCTCATCGGAATGAACTCCAAGCTCA 635 Query 42994 TGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCC 43053 || | |||| ||| || ||| || |||| ||||| | | | || || || Sbjct 634 TGAGTCAGTATATCATGTTCGTGGCAGACCGCCTCCTCTTCGCCCTCGGAGTC-----CC 580 Query 43054 T--CTAC-AACACGCCG--TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | ||| | || | | ||||||||| | ||||| | || || | ||||| Sbjct 579 TAAATACTACCAGGTTGAAAACCCCTTCGAATGGATGGACATGATTTCCCTAACTGGCAA 520 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||| ||||||||||| || | || ||||| Sbjct 519 GACCAACTTCTTCGAGAAGCGTGTTGGTGAGTACCA 484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944041508871440