Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7629 120 7e-22 seq7630 111 4e-19 seq18359 96.9 8e-15 >seq7629 Length=3052 Score = 120 bits (132), Expect = 7e-22 Identities = 179/253 (71%), Gaps = 7/253 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | |||||| || || | || | ||| || |||||||| || || || | Sbjct 2722 CCACCTCTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGAC 2781 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | |||||||| || | ||||| || ||||| || | ||||||| | ||| Sbjct 2782 AAGGTTCTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGG 2841 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || || || ||||||||||| || | ||| | || || Sbjct 2842 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACA 2901 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTCTAA 288486 || || ||||| ||||| || |||| |||||||||||| |||| ||| | || ||||| Sbjct 2902 TCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACAT--TTTTCTTCTA- 2958 Query 288487 TATTTTTAATAAT 288499 ||||||||| Sbjct 2959 ----TTTAATAAT 2967 >seq7630 Length=872 Score = 111 bits (122), Expect = 4e-19 Identities = 175/248 (71%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 288229 ATGATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTT 288288 ||||||| | || || ||||| | |||||| || || | || | || || || Sbjct 253 ATGATGACTTTCAC-TGACCACCTCTGAGTCTCAGGACCAAGTGGAGGGTTGACTCCTTC 311 Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 || || || ||||| | || || | ||||||||| | || || ||||||||||| || Sbjct 312 TGAATGTTGTAGTCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGT 371 Query 288349 CGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| ||| ||| || ||||| || |||||||| || || |||||||| || Sbjct 372 CTTTGTTG---ATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCG 428 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| | || || || || ||||| ||||| ||||| || ||||||||||| Sbjct 429 ATGGTATCTGAGGGCTCAACATCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAG 488 Query 288466 ATCTGCAT 288473 || ||||| Sbjct 489 ATTTGCAT 496 >seq18359 Length=859 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| || || | ||||| ||| || || || || || |||||| | || | || Sbjct 566 TCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCC 625 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 |||||| | ||| ||||| ||||| ||||| | ||||||| |||||| || || || Sbjct 626 GTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTT 685 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||||||||| || || ||||| || || | || | || || || | || || Sbjct 686 GTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTAAT 745 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| ||||| || ||||| Sbjct 746 GGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179273231913482