Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq8878 168 8e-37 seq2561 123 3e-23 seq12789 107 2e-18 >seq8878 Length=3384 Score = 168 bits (186), Expect = 8e-37 Identities = 674/1048 (64%), Gaps = 21/1048 (2%) Strand=Plus/Minus Query 114285 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 114344 |||| || |||||||| | ||| | ||||| || | |||| ||||||| || |||| | Sbjct 2210 CATCAGCCAGACCTTGAATACCTATTCCAATGGGTCTATGTTTCATATTTGAGTTTCTGG 2151 Query 114345 CGGTCTCCACG-GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 114403 | || ||| ||||| || || | || |||| || || || || | |||| Sbjct 2150 CC-TCATCACAAGGATAGAAGTTTCCGTCAATAATTCTGTTCAGGTTGATAGTGATCTGA 2092 Query 114404 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 114463 | | | || ||| |||||||| | || ||| | | | ||| || | Sbjct 2091 TAGGCAACTTAATGTAGCTTTTCATGGTCGAAAACACCATTGG------TGATGTAGCGA 2038 Query 114464 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 114523 || || | ||| || ||||| ||||||| ||||||| | ||||||||| ||| Sbjct 2037 GGGAGTGAGATACTGGCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATA 1978 Query 114524 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 114583 ||||| ||| | ||| |||||||| || || || | |||||| ||||| ||| | | Sbjct 1977 ATTTCGCAACAGAGATTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTT-GCG 1919 Query 114584 TTACACGCA-TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 114642 | || || ||||| |||||||| || | || || || |||||| || | ||| Sbjct 1918 ATTGGCGTGGTCTTTGTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAAT 1859 Query 114643 AGCCTTCCAGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 114702 |||| |||||| | || || ||| | | | | || | ||| || ||||| Sbjct 1858 GGCCTCCCAGACTTTTTGAGCCTTCATAGTTTTGCGGCCAAGTCCTTGCTCTTCATACTT 1799 Query 114703 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG-CCCTGGTGCCTTATCTG 114761 | |||||| ||||||||||| || || | || | || |||| | || | || | Sbjct 1798 TTGGTAGAGAGCTTCAAACTCATCGCCATAAACGTCATAAAGACCCTTG-GCTTCATTGG 1740 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 | ||||| |||| ||| | ||| ||| | || | ||||||||| | || || | || Sbjct 1739 GACAGAAAAGAGTCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCC 1680 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881 | ||| | ||| | || ||| || ||||| | || ||||| | ||| | Sbjct 1679 ATAGACCCATGAACAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATT 1620 Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 114941 | | |||| | |||||| |||||||| ||||| || || | || | || ||||| | Sbjct 1619 GGAGATAGTCAAAGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTC 1560 Query 114942 ---GACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | ||| |||||| |||||| || ||||| |||| || || | ||||| |||| Sbjct 1559 TCTTTCCACCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAA 1500 Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATC 115056 || |||| || | ||||| || ||| || | ||| || ||||||| | Sbjct 1499 GGAGTCCATTTGAGTATCCATTGGTACCC--TTTATGTAGCTTCCTGTAGCTCTGATGTT 1442 Query 115057 ATGGATGTGC-ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGAC 115115 | || ||| | || | || || || | ||| || || | || | | ||||| Sbjct 1441 GT-GAACTGCAAGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTACGTTCTTGAGAG 1383 Query 115116 TGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTT 115175 | ||||||| |||| ||| ||||| |||| | || | ||| ||| ||||| Sbjct 1382 TATCGTAGATACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTT 1323 Query 115176 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGG 115235 | ||| | || ||||||||||||||||| || ||||| || || ||||| || | | Sbjct 1322 GAGGCTTGGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGC 1263 Query 115236 ACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGA 115295 ||| | || ||||| | | | | | || |||||| ||| || || | |||| Sbjct 1262 TCATGAGGTTATAAGTCTCAATGGCTGAGTCAACATCTTCCTTGTGGATTCCTACTGAGA 1203 Query 115296 CCCGCATAAACATGTATTGGGGTGTTTC 115323 | | | | ||||| |||||| |||| Sbjct 1202 CTCTGAGGAGCATGTGCTGGGGTCTTTC 1175 >seq2561 Length=3495 Score = 123 bits (136), Expect = 3e-23 Identities = 839/1327 (63%), Gaps = 53/1327 (4%) Strand=Plus/Plus Query 114100 CTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTA 114159 || ||| | |||||| |||| || |||| |||| ||| || || || | ||||| Sbjct 1262 CTCCCATAAATCAAATTGGAAGAGTCCTTTGGAGAGTGGTGAGCCAGGGAAAGATTCGTA 1321 Query 114160 TGGGCCCTCAACCTCCGCCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTG 114215 || |||||||||| || | || | |||| || | || ||||||||| || | Sbjct 1322 GGGTCCCTCAACCTTAGCTTACTCCATAGAAGCT----TCCATGGATGCGTGATAGATGG 1377 Query 114216 TCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAA--TCAAACGCGAGTCGGCA 114273 |||| || ||| | | |||| | | | | | || ||| ||||| | | | | Sbjct 1378 TCTCGAAGATGAGTTCGTTCAAT-CTTAGAGCACGA-GGATCTTCAAATGGAATTTTGAG 1435 Query 114274 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 114333 ||| || | |||| || | ||||| ||||||| ||||| || | || | | ||| Sbjct 1436 CAATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAATAGGTCTGTGCTTAAGATT 1495 Query 114334 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 114393 || || ||||| | || ||||| |||| |||| |||| |||||||||| || Sbjct 1496 TGAGTTACGAGCCTCAGCGACTGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTT 1555 Query 114394 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC--TGCGAGTCTCTTCA 114451 |||| ||| |||| | || || || || || || | ||| || |||| Sbjct 1556 AGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTATTCTTGCTCCTC-CTTC- 1613 Query 114452 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 114511 ||||| | || || || || || || ||||| ||||||| | ||||| | Sbjct 1614 TTGACGAATCTATTGAGAGCAATAGAGGCAAGATTGCACACAGCTATTTCATCAGGACTT 1673 Query 114512 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 114571 ||| |||||| || || || || | ||| || ||||||||||| || | ||| | | Sbjct 1674 GTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGTTCCTAGGTTTTACTAG 1733 Query 114572 TTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGG 114631 || |||||| | || || ||||| ||||| |||||||| || || || ||||| |||| Sbjct 1734 TTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGTTCCAGTCTCAATTTGA 1793 Query 114632 GACTTGAGAATAGCCTTCC----AGACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCC 114687 |||| | || | ||| || ||||| ||| | ||| | | | ||| Sbjct 1794 GACT--CTACTATCTGTCCCCAAAGCCATCG--GGCCTTAATAGT--CTTGCGACCGCGT 1847 Query 114688 CTCCTCC--TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 114745 | | | || |||| |||||| |||||| ||||| ||| | | ||| Sbjct 1848 CCAGTGCGTTCATACTCCTCGTAGAGCTTTTCAAATTCTTCTCCCCAAGTGGTGGTGAGG 1907 Query 114746 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATG 114805 ||||| || | || || | ||||| ||| | | | |||||| | |||| Sbjct 1908 CCTGGGCACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTGCTCAACTCTTCGCATG 1967 Query 114806 AAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 114865 || | ||| || ||||||||||| |||| | || ||| | | ||||| | || Sbjct 1968 AACAAGTCAGGAATCCAGAGAGCGTAGAACAAGTCACGAGCTCTATTCTCTTCCTTACCG 2027 Query 114866 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 114925 || || ||||| || | ||||| ||| || |||||| || || | || || Sbjct 2028 TGGTTTTTACGCAGCTGGAGGAAGTCATAGATGTCACTGTGCCATGGCTCTACATAGACG 2087 Query 114926 GCGATTG-ACC---CCTTACGACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAA 114981 |||| | ||| ||| | || ||| |||| | ||| || || || ||| |||| || Sbjct 2088 GCGAAAGCACCTTTTCTTTTGCCG-CCACCCTGATCTACGTATCTTGCGGTGTCATTGAA 2146 Query 114982 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT 115041 || |||||| ||||||| || | || | |||||||| || | ||| || | Sbjct 2147 GACCTTAAGCATAGGAATGAGTCCGTTGGAGTATCCATTTGTACCTCTGATATAGGAGTC 2206 Query 115042 ATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 115101 | ||||||| ||| || | | ||| || || || || ||| |||| || Sbjct 2207 AGCAGCTCTGATATCTGAGACGGAAACACCGATGCCACCAGCAGCCTTAGAGA--TGATT 2264 Query 115102 GCACTCCG--TGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGG 115159 ||| | | | ||| | || | || || || || |||| ||| || | | || Sbjct 2265 GCAATTTGTTTCAGAGTTTCGAATATTCCATCTATGGAGT---CCTCCTTGACAGTCAGC 2321 Query 115160 AAGCAGCTCGA---CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 115216 ||| ||| || ||| || ||| | || || |||| |||||| || || || || ||| Sbjct 2322 AAGAAGCAAGAACTCATCTGAGGCTTGGGAGTTCCAGAGTTGAAAAGAGTGGGAGTGGCG 2381 Query 115217 TGGATGAA-CATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTC 115275 || |||| || | | | | ||| ||| || ||||| || | | | | |||| Sbjct 2382 TGAGTGAACCACAGC-TAGCTCATGAGATCATATGTCTCAAATGCTGAAGCTAAATCTTG 2440 Query 115276 CCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGAT--- 115332 | ||||||||| || ||| | ||| | ||||| ||| ||| | |||| | | | Sbjct 2441 CTTGTGAATACCAATGCTGACTCTCATGAGCATGTGTTGAGGTCTCTCCAAAATGGTGGA 2500 Query 115333 ACCATCGAGCCTCTGGAGGTAA-CTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGT 115391 |||||| | | |||||| ||||| || || || ||| ||||| ||| || ||| Sbjct 2501 ACCATC---CTTTAATAGGTAAGCTCTT-TCTAATGTTCTGAACCCAAAGTAATCATAGT 2556 Query 115392 CATAGTC 115398 ||||| Sbjct 2557 TGTAGTC 2563 >seq12789 Length=2278 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| | |||||| ||||||||||| | || || |||||| ||| || |||||||| || Sbjct 786 GTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCC 845 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 || ||||| | |||||| || | || || || || ||||||||||| ||||||||| Sbjct 846 ACGTTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGC 905 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 126209 ||||| |||| || | ||| || |||| || Sbjct 906 TGCGAAGGCAACAAGTCTCTCGGCGAAGGCGC 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597165291744520