Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq18359 96.9 4e-15 seq7630 96.9 4e-15 >seq18359 Length=859 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC- 42040 ||||||||||| | | |||||||| | ||| |||||| ||||| ||||| || || Sbjct 555 CCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTC-GCT 613 Query 42041 -CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 || || || |||| || || ||||| || ||||| || |||| ||| || |||| || Sbjct 614 TAAGGTTCTGC-CGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTG 672 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||||||||| |||||| |||| || | | ||||| | || | Sbjct 673 GGATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAA 732 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || ||||| || || || || ||||| || || |||||||| Sbjct 733 CGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Score = 82.4 bits (90), Expect = 8e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| || || || ||||| | | || || |||| ||| || || || Sbjct 362 CTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAA 421 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||| ||| || |||| ||| | | ||| ||||| ||| || ||| | | Sbjct 422 GATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATT 481 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| | ||| || |||| ||||| || || || || || |||||||| Sbjct 482 CTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTAC 541 Query 42197 AAAGATTTGCATT 42209 ||| ||||||||| Sbjct 542 AAAAATTTGCATT 554 >seq7630 Length=872 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | | | |||||| || | || |||||| || || |||||||| Sbjct 497 ACCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCT 556 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || || ||||| ||||| || ||||||| ||| ||||||| ||| Sbjct 557 GAGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGG 616 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||||| ||| || |||| || | | |||||| | || || Sbjct 617 GATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAAC 676 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| || || || || ||||| || ||||||||||| || Sbjct 677 GTCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTT 727 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| ||||| | | || ||||| || | || |||||| ||||| ||||| |||| Sbjct 268 GACCACCTCTGAGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAG 327 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 ||||| | |||| || |||||||| || ||||| || |||| || || |||| | Sbjct 328 AAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGG 387 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | | ||||||||| ||| || || | || | | || || | || | Sbjct 388 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAA 447 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 448 CATCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543041558954960