Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq7630 107 2e-18 seq18359 102 8e-17 >seq7630 Length=872 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| ||||| | |||| || || || || || ||||||||||| || ||| | | Sbjct 509 TCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCTGCC 568 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||||||| |||||||| ||| | ||||| | ||| |||||||| || ||||| || || Sbjct 569 GTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTT 628 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 ||||| || || ||| ||| ||| | || || | || || || | || | Sbjct 629 GTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACGTCCAAGGTGAT 688 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| ||||| | || || ||||| |||||||| || Sbjct 689 GGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATGTT 727 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | | || | ||||||||||||||||||| Sbjct 300 GTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCT 359 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || | || || ||||| ||||| ||||| || || || || || ||| Sbjct 360 GCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTC 419 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||| || || || || | ||| | |||||||||||| | || Sbjct 420 ACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGAGTGATGGTCTTGCCGGTGAGGGTC 479 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 480 TTGACGAAGATTTGCAT 496 >seq18359 Length=859 Score = 102 bits (112), Expect = 8e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| || ||||| || | || || || ||||||||||| || || || || | | Sbjct 338 TCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACC 397 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 |||||||||| ||| |||||| | || || | ||| || ||||| || ||||| ||||| Sbjct 398 ATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTT 457 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 ||||| | | || ||||| ||| ||| | || || || || || || | || | Sbjct 458 GTCTTGGA-TCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGA 516 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| ||||| | ||| ||||| |||||||||||| Sbjct 517 TTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || || | ||||| || || || || ||||||||||| || | ||| | Sbjct 564 AATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTG 623 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 |||||||||| ||||| ||||| |||| || | ||| || ||||| || || || || Sbjct 624 CCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCC 683 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || || || ||||| ||| || ||| | || ||| | || || || | ||| Sbjct 684 TTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTA 743 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||| ||||| | || || |||||||||||||| Sbjct 744 ATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499487293222360