Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2561 199 4e-46 seq8878 140 3e-28 >seq2561 Length=3495 Score = 199 bits (220), Expect = 4e-46 Identities = 495/748 (66%), Gaps = 4/748 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || || || |||||| | || || || ||| |||||| ||| || ||| || Sbjct 2380 GCCACTCCCACTCTTTTCAACTCTGGAACTCCCAAGCCTCAGATGAGTTCTTGCTTCTTG 2321 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 |||| ||||| |||||||| ||||| ||||| | || || | ||| | | Sbjct 2320 CTGACTGTCAAGGAGGACTCCATAGATGGAATATTCGAAACTCTGAAACAAATTGCAATC 2261 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || || || || ||||| | ||| || | | || | ||| Sbjct 2260 ATCTCTAAGGCTGCTGGTGGCATCGGTGTTTCCGTCTCAGATATCAGAGCTGCTGACTCC 2201 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || ||| | ||||| ||||| ||||||||| ||| | |||||||| ||||||||| Sbjct 2200 TATATCAGAGGTACAAATGGATACTCCAACGGACTCATTCCTATGCTTAAGGTCTTCAAT 2141 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || | ||||| || |||||||| || | || || ||| ||||||| |||||| Sbjct 2140 GACACCGCAAGATACGTAGATCAGGGTGGCGGCAAAAGAAAAGGTGCTTTCGCCGTCTAT 2081 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 | ||||| |||||| ||| | | | ||| || | ||||| || |||||||| || Sbjct 2080 GTAGAGCCATGGCACAGTGACATCTATGACTTCCTCCAGCTGCGTAAAAACCACGGTAAG 2021 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | || || | ||| | ||||||||||||||| | || ||| | || ||| | Sbjct 2020 GAAGAGAATAGAGCTCGTGACTTGTTCTACGCTCTCTGGATTCCTGACTTGTTCATGCGA 1961 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || ||| | ||| | ||||| ||| | |||||||| || || || || || || Sbjct 1960 AGAGTTGAGCACAACGAAGACTGGACTCTCATGTGTCCCAACGAGTGCCCAGGCCTCACC 1901 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCA--GGGCAAGG 94429 | ||| ||| |||||| | | || | || ||| |||| || | || Sbjct 1900 ACCACTTGGGGAGAAGAATTTGAAAAGCTCTACGAGGAGTATGAA-CGCACTGGACGCGG 1842 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 | | ||| ||| | || | ||| |||| ||||| || || || | |||| Sbjct 1841 TC-GCAAGACTATTAAGGCCCGATGGCTTTGGGGACAGATAGTAGAGTCTCAAATTGAGA 1783 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 | || || || ||||| | | ||| || || ||| ||||||||| || | ||| Sbjct 1782 CTGGAACTCCTTACATGCTCTACAAAGATGCTTGCAATAGAAAGTCCAACTAGTAAAACC 1723 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || || |||||||||||||| ||||| ||||| || |||| || ||| || | Sbjct 1722 TAGGAACCATTAAGAGCTCGAATCTTTGCACTGAGATCGTAGAGTTCACAAGTCCTGATG 1663 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCAT 94637 | || |||||||| || || | ||| || Sbjct 1662 AAATAGCTGTGTGCAATCTTGCCTCTAT 1635 Score = 109 bits (120), Expect = 5e-19 Identities = 136/186 (73%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 95025 GAAGCCCT---CGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGG 95081 |||||||| | | || || || ||||||| ||| | ||||| || | | || Sbjct 1259 GAAGCCCTGCTCTGATCGATATGATTGGGAAGGTCTCAGAAGAGATGTAATTCAGTATGG 1200 Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141 || | |||| |||||||| | || || ||||| || ||||| || | ||||| ||||| Sbjct 1199 TGCTAGAAACTCGCTGCTTCTAGCTCCTATGCCAACCGCCTCTACTTCTCAGATTCTTGG 1140 Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201 ||||||||| | || || |||| ||||||||||||||| | ||| | |||||||| || Sbjct 1139 AAACAACGAGACTTTTGAGCCCTACACCTCCAACGTGTATACCAGAAGAGTGCTCGCTGG 1080 Query 95202 GGAATT 95207 ||||| Sbjct 1079 TGAATT 1074 >seq8878 Length=3384 Score = 140 bits (154), Expect = 3e-28 Identities = 481/741 (65%), Gaps = 8/741 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || || || || || |||||||| || ||||| ||| || ||| || |||||| || Sbjct 1283 GCTACACCCACTCTCTTCAACGCTGGTACCCCCAAGCCTCAAATGAGCTCCTGTTTCTTG 1342 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | | || |||| |||||| ||| ||| || | ||| | |||||| || || | Sbjct 1343 CTCATGATGAAGGACGACTCTATCCACGGTATCTACGATACTCTCAAGAACGTAGCACTC 1402 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || || || || || ||| | || | || ||| || | | || | || | Sbjct 1403 ATTTCTAAGAGTGCTGGTGGAGTAGGACTTGCAGTTCACAACATCAGAGCTACAGGAAGC 1462 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||||||||| ||| || || ||| | || |||||| | |||||||| Sbjct 1463 TACATAAAGGGTACCAATGGATACTCAAATGGACTCCTTCCCATGCTCAGAGTCTTCAAT 1522 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || | || || |||||||| ||||| | ||| |||||||| || || ||||| Sbjct 1523 GAGACAGCAAGATATGTAGACCAGGGAGGTGGAAAGAGAAAGGGTTCCTTTGCCATCTAT 1582 Query 94192 CTCGAGCCCTGGCACGCGGACGT-GCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 || || ||||||||||| || | | || || || | || ||||||| || || || Sbjct 1583 CTTGAACCCTGGCACGCTGATATCTTTGACTATC-TCCAATTGAGAAAGAATCATGGTAA 1641 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | | | || | ||| | ||| | ||| ||||| || || | || ||||| Sbjct 1642 AGAAGAGCAACGAGCTCGTGACTTGTTCATGGGTCTATGGGTTCCTGATTTGTTCATGAA 1701 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 | ||| | | || | ||||| |||||| |||||||||||| || || | Sbjct 1702 GAGAGTCCAAGAGAATGGAGACTGGACTCTTTTCTGTCCCAATGAAGCCAAGGGTCTTTA 1761 Query 94371 CGACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCAA 94427 ||||||| || ||| | | ||||||| | || || ||| || ||| | Sbjct 1762 TGACGTTTATGGCGAT-GAG-TTTGAAGCTCTCTACCAAAAGTATGAAGAGCAAGGACTT 1819 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 |||| | || |||| | ||| || | ||||| || | || | || | || Sbjct 1820 GGCC-GCAAAACTATGAAGGCTCAAAAAGTCTGGGAGGCCATTATTGAGGCCCAAATTGA 1878 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 || || | || ||||| | | ||| ||| | ||| |||| ||| ||| || | Sbjct 1879 AACTGGAAATCCTTACATGCTCTACAAAGACCACGCCAATCGCAAGAGCAATCAGAAGAA 1938 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 ||| || |||||||| || ||||| || ||| ||| | ||||| |||||| | || Sbjct 1939 CCTTGGAACTATCAAGAGTTCTAATCTCTGTTGCGAAATTATGGAGTACACTTCTGCTGA 1998 Query 94608 CGAGATTGCTGTGTGTAACCT 94628 |||||||||||||| || || Sbjct 1999 TGAGATTGCTGTGTGCAATCT 2019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494567244695240