Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq12789 100 3e-16 seq18359 93.3 4e-14 >seq12789 Length=2278 Score = 100 bits (110), Expect = 3e-16 Identities = 297/450 (66%), Gaps = 11/450 (2%) Strand=Plus/Minus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||| | | || |||||||| || |||||| | || || |||||| || | Sbjct 929 GCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTTTCTGC 870 Query 52452 GCCATCTTTTACATTAA--AACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGT 52509 ||||||| | | || |||| ||| | |||||||||||||| ||| |||||||| Sbjct 869 TCCATCTTCTGGCTCAAGAAACGT--GGCCTCATGCCCGGCCTGACCTTCTCCAACGAGT 812 Query 52510 TGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCG 52569 |||| || || || || || ||||||| ||||| || |||||| |||||| || | Sbjct 811 TGATCTCCCGTGATGAGGGTATGCACACCGACTTCGCTTGCCTCCTCTACAA---GCACA 755 Query 52570 TGACCGA-AAAATTGGATTCGGACACGATCCT-GAGCATGTTCAAGGAGGCGGTGGCTAT 52627 | | | | || || | || || | ||| | ||| || ||| | || || || || Sbjct 754 TCAACAACAAGATCTCAAACGAACGC-ATCATCGAG-ATCATCACCAACGCAGTTGCCAT 697 Query 52628 CGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC 52687 ||| ||||| | | | || || || ||||| | || |||||| | || Sbjct 696 CGAGCTCGAGTTCGTGTGCGAGTCTCTCCCAGTGGAGCTCATCGGAATGAACTCCAAGCT 637 Query 52688 CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAA 52747 |||| | |||| ||| ||| ||||| || || || | | ||||| || || Sbjct 636 CATGAGTCAGTATATCATGTTCGTGGCAGACCGCCTCCTCTTCGCCCTCGGAGTCCCTAA 577 Query 52748 GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGAC 52807 |||| | | | | || || || || | ||| ||| ||||| || |||||||| Sbjct 576 ATACTACCAGGTTGAAAACCCCTTCGAATGGATGGACATGATTTCCCTAACTGGCAAGAC 517 Query 52808 CAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||| ||||||||||| || || ||||| Sbjct 516 CAACTTCTTCGAGAAGCGTGTTGGTGAGTA 487 >seq18359 Length=859 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||| |||||||| | ||| | || || || | || |||| | Sbjct 360 GACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCAAGCTACTTTCCGGCA 419 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | |||||| || || || || || |||||||| ||| || ||| | Sbjct 420 AAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTCACA 479 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| | || || |||| || | || || || || ||||| ||| Sbjct 480 TTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTT 539 Query 138601 ACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 540 ACAAAAATTTGCAT 553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496105959481680