Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18359 100 3e-16 seq7630 84.2 2e-11 >seq18359 Length=859 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || | ||||| | |||||||| | || ||||| || ||||| ||||| |||| Sbjct 554 TCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCT 613 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | || || || || ||||| ||| | |||| || ||| |||||||| || Sbjct 614 TAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGG 673 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| |||||| ||||| | || | |||||| | ||| || Sbjct 674 GATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAAC 733 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||| || || || || ||||| ||||| Sbjct 734 GTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||| || || |||| | || | | ||| || |||| ||||| Sbjct 357 GTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCAAGCTACTTTCCG 416 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | || ||| |||||||| || || ||||| ||||| ||| || || Sbjct 417 GCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTC 476 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | ||||| |||| || | || || ||||| ||||| Sbjct 477 ACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTTCCGGTGAGAGTC 536 Query 127097 TTTACAAAAATCTGCAT 127113 ||||||||||| ||||| Sbjct 537 TTTACAAAAATTTGCAT 553 >seq7630 Length=872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | |||||||| || || || |||||||||| | || | || || Sbjct 515 CACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTGAGGGTTCTGCCGTCTTC 574 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 || || || ||||| |||| | || ||| || ||||| || || ||||||||||| Sbjct 575 AAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGGATTCCCTCCTTGTCTTG 634 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | ||| || || | ||| | || || Sbjct 635 GATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACGTCCAAGGTGATGGTCTT 694 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||| || || || || || || |||||| Sbjct 695 TCCGGTAAGGGTCTTAACGAAGATTTGCATG 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475350904316560