Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq18359 107 2e-18 seq8878 84.2 2e-11 >seq18359 Length=859 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || | ||| || | ||||| || || || || |||||||| || ||||| |||||| Sbjct 327 CCACCTCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTG 386 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || ||| || | | ||||| || | || | || || || || || || Sbjct 387 AGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGG 446 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || ||||| ||||| || || ||| | || | ||||||||| | ||||| Sbjct 447 ATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACG 506 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || || ||||| ||||| ||||||||||||||||| Sbjct 507 TCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCAT 553 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || | || | ||| || || || ||||| || || || || ||| Sbjct 552 ATTCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCG 611 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| | || || | ||| ||||| ||| | |||| || || || || || Sbjct 612 CTTAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGT 671 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || ||||| |||| || | || | |||||| || | ||| Sbjct 672 GGGATGCCCTCCTTGTCCTGGATTTTAGCCTTGA-CGTTCTCAATGGTGTCAGATGGCTC 730 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| || || ||||| || || || || ||||||||||| Sbjct 731 AACGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq8878 Length=3384 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||||| || | ||| | ||||| |||| || |||||||||||||||||| | ||| Sbjct 1859 ATTATTGAGGCCCAAATTGAAACTGGAAATCCTTACATGCTCTACAAAGACCACGCCAAT 1918 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 | || | |||||||| ||| | ||||| || || || |||||| || | ||||||| Sbjct 1919 CGCAAGAGCAATCAGAAGAACCTTGGAACTATCAAGAGTTCTAATCTCTGTTGCGAAATT 1978 Query 123708 ATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAAT 123746 || || |||| ||| ||| | | || ||||| ||| Sbjct 1979 ATGGAGTACACTTCTGCTGATGAGATTGCTGTGTGCAAT 2017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451860711641240