Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8878 176 6e-39 seq12789 116 5e-21 seq2561 113 6e-20 >seq8878 Length=3384 Score = 176 bits (194), Expect = 6e-39 Identities = 678/1051 (65%), Gaps = 27/1051 (3%) Strand=Plus/Minus Query 116246 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 116305 |||| || |||||||| | ||| | ||||| || | |||| ||||||| || |||| | Sbjct 2210 CATCAGCCAGACCTTGAATACCTATTCCAATGGGTCTATGTTTCATATTTGAGTTTCTGG 2151 Query 116306 CGGTCTCCACG-GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 116364 | || ||| ||||| || || | || |||| || || || || | |||| Sbjct 2150 CC-TCATCACAAGGATAGAAGTTTCCGTCAATAATTCTGTTCAGGTTGATAGTGATCTGA 2092 Query 116365 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTA 116424 | | | || ||| |||||||| | || ||| | | | ||| || | Sbjct 2091 TAGGCAACTTAATGTAGCTTTTCATGGTCGAAAACACCATTGG------TGATGTAGCGA 2038 Query 116425 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 116484 || || | ||| || ||||| ||||||| ||||||| | ||||||||| ||| Sbjct 2037 GGGAGTGAGATACTGGCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATA 1978 Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 ||||| ||| | ||| |||||||| || || || | |||||| ||||| ||| | | Sbjct 1977 ATTTCGCAACAGAGATTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTT-GCG 1919 Query 116545 TTACACGCA-TCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 116603 | || || ||||||||||| || || | || || || |||||| || | ||| Sbjct 1918 ATTGGCGTGGTCTTTGTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAAT 1859 Query 116604 AGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTT 116663 |||| ||| || | || || ||| | | | | || | ||| || ||||| Sbjct 1858 GGCCTCCCAGACTTTTTGAGCCTTCATAGTTTTGCGGCCAAGTCCTTGCTCTTCATACTT 1799 Query 116664 TGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAG-CCCTGGTGCCTTATCTG 116722 | |||||| || |||||||| || || | | || | || |||| | || | || | Sbjct 1798 TTGGTAGAGAGCTTCAAACTCATCGCCATAAACGTCATAAAGACCCTTG-GCTTCATTGG 1740 Query 116723 GACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCC 116782 ||||||| |||| ||| | ||| ||| | || | ||||||||| | || || | || Sbjct 1739 GACAGAAAAGAGTCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCC 1680 Query 116783 AGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 116842 | || || ||| | || ||| || ||||| | || ||||| | ||| | Sbjct 1679 ATAGACCCATGAACAAGTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATT 1620 Query 116843 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGC 116902 | | |||| | |||||| |||||||| ||||| || || | || | || ||||| | Sbjct 1619 GGAGATAGTCAAAGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTC 1560 Query 116903 ---GACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | ||| |||||| |||||| || || || | || || || | ||||| |||| Sbjct 1559 TCTTTCCACCTCCCTGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAA 1500 Query 116960 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTG--GCTCTGACATC 117017 || |||| || | ||||| || ||| || | ||| || ||||||| | Sbjct 1499 GGAGTCCATTTGAGTATCCATTGGTACCC--TTTATGTAGCTTCCTGTAGCTCTGATGTT 1442 Query 117018 GTGGATGTGC-ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGAC 117076 || || ||| | || | || || || | ||| || || |||| | | ||||| Sbjct 1441 GT-GAACTGCAAGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTACGTTCTTGAGAG 1383 Query 117077 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA---CA 117133 | ||||||| || | ||| ||||| |||| | ||||| ||| | | || || Sbjct 1382 TATCGTAGATACCGTGGATAGAGTCGTCCTTCAT---CATGAGCAAGAAACAGGAGCTCA 1326 Query 117134 TTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT 117193 |||| ||| | || ||||||||||||||||| || ||||| || || ||||| || | Sbjct 1325 TTTGAGGCTTGGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGT 1266 Query 117194 GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTG 117253 | ||| | || ||||| | | | ||| || |||||| ||| || || | || Sbjct 1265 CGCTCATGAGGTTATAAGTCTCAATGGCTGAGTCAACATCTTCCTTGTGGATTCCTACTG 1206 Query 117254 AGACCCGCATAAACATGTATTGGGGTGTTTC 117284 |||| | | | ||||| |||||| |||| Sbjct 1205 AGACTCTGAGGAGCATGTGCTGGGGTCTTTC 1175 >seq12789 Length=2278 Score = 116 bits (128), Expect = 5e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | |||||| ||||||||||| | || || |||||| ||| || |||||||| || Sbjct 786 GTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCC 845 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| | |||||| || | || || ||||| ||||||||||| ||||||||| Sbjct 846 ACGTTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGC 905 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGC 127682 ||||| |||| || | |||||| |||| || Sbjct 906 TGCGAAGGCAACAAGTCTCTCGGCGAAGGCGC 937 >seq2561 Length=3495 Score = 113 bits (124), Expect = 6e-20 Identities = 356/544 (65%), Gaps = 16/544 (3%) Strand=Plus/Plus Query 116061 CTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATA 116120 |||||| | |||||| |||| || |||| ||| ||| || || || | || || Sbjct 1262 CTCCCATAAATCAAATTGGAAGAGTCCTTTGGAGAGTGGTGAGCCAGGGAAAGATTCGTA 1321 Query 116121 TGGGCCCTCAACCTCCGCCAATTC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTG 116176 || |||||||||| || | || | |||| || | || ||||||||| || | Sbjct 1322 GGGTCCCTCAACCTTAGCTTACTCCATAGAAGCT----TCCATGGATGCGTGATAGATGG 1377 Query 116177 TCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAA--TCAAACGCGAGACGGCA 116234 |||| || ||| | | |||| | | | | | || ||| ||||| | | | Sbjct 1378 TCTCGAAGATGAGTTCGTTCAAT-CTTAGAGCACGA-GGATCTTCAAATGGAATTTTGAG 1435 Query 116235 CAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATT 116294 ||| || | |||| || | ||||| ||||||| ||||| || | || | | ||| Sbjct 1436 CAATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAATAGGTCTGTGCTTAAGATT 1495 Query 116295 AGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 || || ||||| | || ||||| |||| |||| |||| |||||||||| || Sbjct 1496 TGAGTTACGAGCCTCAGCGACTGGATAGTAATTGTTATCTATAATTTTATTTAGATTCTT 1555 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC--TGCGAGTCTCTTCA 116412 |||| ||| |||| | || || || || || || | ||| || |||| Sbjct 1556 AGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTATTCTTGCTCCTC-CTTC- 1613 Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 ||||| | || || || || || || ||||| ||||||| | ||||| | Sbjct 1614 TTGACGAATCTATTGAGAGCAATAGAGGCAAGATTGCACACAGCTATTTCATCAGGACTT 1673 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 ||| |||||| || || || || | ||| || ||||||||||| || | ||| | | Sbjct 1674 GTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGTTCCTAGGTTTTACTAG 1733 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || |||||| | || || ||||| ||||||||||| || || || || ||||| |||| Sbjct 1734 TTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGTTCCAGTCTCAATTTGA 1793 Query 116593 GACT 116596 |||| Sbjct 1794 GACT 1797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613313799524040