Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq12789 131 3e-25 >seq12789 Length=2278 Score = 131 bits (144), Expect = 3e-25 Identities = 324/485 (67%), Gaps = 10/485 (2%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||| | ||| || ||||| | |||| ||||| Sbjct 501 CTTCTCGAAGAAGTTGGTCTTGCCAGTTAGGGAAATCATGTCCATCCATTCGAAGGGGTT 560 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | || || ||| || || | |||||| || || | | ||||||||| || Sbjct 561 TTCAACCTGGTAGTATTTAGGGACTCCGAGGGCGAAGAGGAGGCGGTCTGCCACGAACAT 620 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||| || || ||| ||| |||| || || | ||| || ||||| | || | Sbjct 621 GATATACTGACTCATGAGCTTGGAGTTCATTCCGATGAGCTCCACTGGGAGAGACTCGCA 680 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTTCGTACC 159887 || ||||| ||| || | || || | ||| | |||| ||| || ||||||| Sbjct 681 CACGAACTCGAGCTCGATGGCAACTGCGTTGGTGATGATCT-CGATGATGCGTTCGTTTG 739 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 |||| ||||| ||| | |||||||| || |||||| ||||| |||| Sbjct 740 AGATCTTGTTGTTGATGTG---CTTGTAGAGGAGGCAAGCGAAGTCGGTGTGCATACCCT 796 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 | || || ||||| ||||||||||| | | | ||||| ||||||| ||||| |||| Sbjct 797 CATCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGA 856 Query 160008 GCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| ||| |||| ||| || ||||| |||||||| || || || || Sbjct 857 GCCAGAAGATGG-AGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCA 915 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 || || ||||| | | ||||| || ||| | | |||| | ||||| |||||| Sbjct 916 ACAAGTCTCTCGGCGA---AGGCGCTGTGGTCGTTGATCCAGCGGAGAGCCCAATCAGCC 972 Query 160127 TTCTT 160131 ||||| Sbjct 973 TTCTT 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794904537262640