Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq7629 145 2e-29 seq18359 140 8e-28 seq7630 140 8e-28 seq18358 87.8 4e-12 >seq7629 Length=3052 Score = 145 bits (160), Expect = 2e-29 Identities = 167/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| || || | |||||| || ||||||||||||| |||||| |||| ||| || || Sbjct 2731 AGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGACAAGGTTCTA 2790 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||||| || |||||| || |||||||| | ||| || || ||| || ||||| Sbjct 2791 CCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGGATACCTTCC 2850 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||||||| ||||| |||||| | | || ||||| | ||| Sbjct 2851 TTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACATCAAGGGTG 2910 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || |||||||| || | ||| || || || || |||||||| Sbjct 2911 ATAGTCTTACCAGTCAAAGTCTTGACGAAGAT---CTACATTTT 2951 >seq18359 Length=859 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||| ||||| ||||||||||| ||||||||||| | ||| ||||| | ||| || Sbjct 336 AGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTA 395 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| |||| ||||||||| ||||| || | ||| || || || ||||| ||| Sbjct 396 CCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCT 455 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || || ||||| ||||| |||| |||||| | | ||| || || | ||| Sbjct 456 TTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTG 515 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || |||||||| || ||||||||||| Sbjct 516 ATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTG 550 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | || ||||| |||||||| || | ||||||||| || || || || Sbjct 566 TCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGTTCTGCC 625 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| || |||||||||||||| || || | ||| || || || || || || Sbjct 626 GTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCCCTCCTT 685 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||| || || ||| ||| || | |||||| | || || || ||||| || || Sbjct 686 GTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAAAGTAAT 745 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || ||||| |||||||| Sbjct 746 GGTCTTTCCGGTGAGGGTCTTCACGAAAATTTG 778 >seq7630 Length=872 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 ||||||||||| | |||||| || |||||||| || | ||||||||||| | ||| ||| Sbjct 279 AGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTT 338 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 || ||||| |||||||| || |||||||| || | || || || || ||| ||||| Sbjct 339 CCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCC 398 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||| ||||| ||||||| |||| ||| |||| | || ||||| | ||| Sbjct 399 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGAGTG 458 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||| || || || || ||||| Sbjct 459 ATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 493 >seq18358 Length=408 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 199483 CTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAAT 199542 ||||||||| ||||| ||||| | ||| ||||| || || ||||| |||||||| Sbjct 406 CTGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGAAT 347 Query 199543 CTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACC 199602 ||| ||| || ||| | |||||| | || || ||||| | ||||| ||||| || Sbjct 346 CTTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAACATCGAGGGTGATGGTCTTTCC 287 Query 199603 CGTGAGAGTTTTCACAAAAATTT 199625 ||||| ||||| || ||||||| Sbjct 286 AGTGAGGGTTTTGACGAAAATTT 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178540668694673