Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12789 215 5e-51 seq7630 132 5e-26 seq18359 116 4e-21 seq7629 84.2 2e-11 >seq12789 Length=2278 Score = 215 bits (238), Expect = 5e-51 Identities = 428/621 (69%), Gaps = 17/621 (3%) Strand=Plus/Plus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 |||||| | | | |||||| |||||| |||| ||||| || | ||| || | ||| Sbjct 757 TGCTTGTAGAGGAGGCAAGCGAAGTCGGTGTGCATACCCTCATCACGGGAGATCAACTCG 816 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 ||| ||| |||| ||||||||||||||| ||||| |||||||| || |||| | |||| Sbjct 817 TTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGCCAGAAGATGGAGCAGAAA 876 Query 133000 CTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTG 133059 ||| || ||||||| |||||| || || ||||| || || || | |||| |||| | Sbjct 877 GAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACAAGTCTCTCGGCGAA---G 933 Query 133060 GCTTCTTTGCT-GGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCAT 133118 || || || | | ||||||||| || ||||| || ||||| | ||||| || || Sbjct 934 GC-GCTGTGGTCGTTGATCCAGCGGAGAGCCCAATCAGCCTTCTTAGTGACGACGGGGAT 992 Query 133119 CGTTTCGATGGCGTTCAACA--AACGGAGTTTCTCTTCCGAGGAAC--GCACGTAGGTGT 133174 || | | || || || | ||| |||||| | |||| | | | ||| | Sbjct 993 GTTTGCAGTAGCCTTGAAGAGGAAC--TCTTTCTCAT--GAGGGTCTGAGATGAGGGTAT 1048 Query 133175 CGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAA 133234 |||| ||| || || | || ||||| | ||||||||| ||||| || || || | Sbjct 1049 CGATCAGGAGTGAGTAGGTCTCGGAGTGGATGTTCTCCATCATCATTTGGAAACCATAGA 1108 Query 133235 AGCACCGCGCCTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTG 133293 |||| || |||||| |||||| | || | || ||| || | | || || |||||| Sbjct 1109 AGCAGCGAGCCTCGGGCACCTGAATCTC-AGTGCAGAACTTCTGGGCGAGGTTCTCGTTG 1167 Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353 ||||| |||||| ||| ||||| ||||| ||||||||||||| || || |||||| Sbjct 1168 ACGATACCGTCGGAGGCAGCGAAGAAGGCGAGCACGTGCTTGACAAAGTGCTTTTCGTTG 1227 Query 133354 TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAA 133413 || || | |||||||||||| || ||| ||||| | ||||| ||||| Sbjct 1228 TCATTAAGGCGCTCCCAGTCCTTAACATCGGTGGCGAGGTCGATTTCCTCAGATGTCCAG 1287 Query 133414 AACGACGCC-TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAAT 133472 || | ||| || | | |||||||| |||| ||||| || | ||||| | || Sbjct 1288 AATGCAGCCATCTG-GTCCTTGTACATTTTCCAGATGTCGTTGTACTTGATGGGGAGGAT 1346 Query 133473 CACAAACCGGCGGGGGTTTTC 133493 ||||| ||| |||||||| Sbjct 1347 GACAAAGCGGTTAGGGTTTTC 1367 >seq7630 Length=872 Score = 132 bits (146), Expect = 5e-26 Identities = 177/246 (72%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 38215 AGTTACAATAAGTGAAACT-----CTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCAC 38269 ||||| ||| | | ||||| || || || |||||||| ||||| || || || || Sbjct 758 AGTTATAATTAATTAAACTACTCACTCAAACAACATGCAAATCTTCGTTAAGACCCTTAC 699 Query 38270 GGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAA 38329 || || ||||||||| | ||||| ||| | |||||| | | | | | || | || Sbjct 698 CGGAAAGACCATCACCTTGGACGTTGAGCCATCCGACACCATCGAGAATGTCAAGGCCAA 639 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||| |||||||| || ||||||||||| | ||||| | || ||||| || Sbjct 638 GATCCAAGACAAGGAGGGAATCCCACCCGACCAACAGAGACTCATCTTTGCTGGCAAGCA 579 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 || || |||| | ||||||| ||| ||||||||||| ||||| | || || || || Sbjct 578 ACTTGAAGACGGCAGAACCCTCAGCGATTACAACATCCAGAAGGAGTCTACCCTTCACTT 519 Query 38450 GGTGCT 38455 |||||| Sbjct 518 GGTGCT 513 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| ||||| |||||||| | || || ||| || | Sbjct 496 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCA 437 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| || || |||||| |||| || Sbjct 436 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCA 378 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| ||||| ||||| || |||| | || || |||||||| Sbjct 377 ACAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAA 318 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || || || ||||| ||| | | ||||| || Sbjct 317 CATTCAGAAGGAGTCAACCCTCCACTTGGTCCTGAGACTCAGAGGTGG 270 >seq18359 Length=859 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||| || | ||||| ||| | | Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCT 722 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||||||| ||||| ||||| || || |||| || Sbjct 721 GACACCATTGAGAACG-TCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCA 663 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | || |||| ||| || || || || || |||| | ||| | | ||||||||| Sbjct 662 ACAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAA 603 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || || |||||||| || | || ||||| || Sbjct 602 CATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGG 555 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || ||||| || ||||| || || || ||||| |||||||||| || | Sbjct 554 AATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTC 495 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | |||| || |||| |||||||||||||| || |||| || Sbjct 494 CGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 435 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | || || | || || || |||| || || | | || |||| |||||| || Sbjct 434 ACAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAA 375 Query 38423 CATCCAAAAGGA 38434 ||| |||||||| Sbjct 374 CATTCAAAAGGA 363 >seq7629 Length=3052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||| | || ||||| || || | || || || || |||||| | || || ||| | Sbjct 2952 AAAAATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCC 2893 Query 38300 CACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||||| | | | ||||| | || | || || | ||||| || || || || | | Sbjct 2892 TTCCGACACCATCGAAAACG-TGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTG 2834 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | |||||| | ||||| | || || || || |||| |||| | ||| | || | Sbjct 2833 ATCAACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATT 2774 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||||||| | || || || |||||||| | | ||||| ||| Sbjct 2773 ACAACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCAGACTCAGAGGTGGC 2721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500015126776960