Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq20592 120 1e-21 seq7630 120 1e-21 seq18359 109 2e-18 seq24161 107 8e-18 seq7629 104 9e-17 >seq20592 Length=348 Score = 120 bits (132), Expect = 1e-21 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||||||||| ||||||||||||||||| | || ||||| |||| Sbjct 171 ATGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTGAGCCATCA 112 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | || || || ||||| |||||||| || || || |||||| Sbjct 111 GATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 52 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213 ||| | || || ||| | || |||||| | ||||| || ||||| Sbjct 51 CAAAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGTAGAAC 8 >seq7630 Length=872 Score = 120 bits (132), Expect = 1e-21 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || |||||||||||||| | || Sbjct 496 ATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCTCA 437 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | || || || || || |||||||| ||||| || |||||| Sbjct 436 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATCAA 377 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || ||| |||| || || |||||||| ||||||||| | | || || || Sbjct 376 CAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACAAC 317 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| |||| || ||||| || | ||||| ||||| Sbjct 316 ATTCAGAAGGAGTCAACCCTCCACTTGGTCCTGAGACTCAGAGG 273 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || || | || ||||| |||| Sbjct 724 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGAGCCATCC 665 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || ||||| ||||| ||||| || || || ||| Sbjct 664 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAA 605 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || || ||||||||||| || ||||| | ||||| || Sbjct 604 CAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCGATTACAAC 545 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || |||||||| || | ||||| |||||| Sbjct 544 ATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCAGACTTAGAGGA 500 >seq18359 Length=859 Score = 109 bits (120), Expect = 2e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || || |||||| | || ||||| ||||| Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCT 722 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || ||||| || || ||||| || || || || |||||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAA 662 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | |||||| | || || ||||||||||| || ||||| || || || || Sbjct 661 CAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAAC 602 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACAttttttt 391289 ||| | ||||| | || ||||| || || | ||| | |||||| ||| || ||||| Sbjct 601 ATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGGAATGCAAATTTTT 542 Score = 86.0 bits (94), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || || || || || || || || || || || ||| | || Sbjct 554 AATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTC 495 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | ||| || || ||||| || || ||||| || || ||||| Sbjct 494 CGACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCA 435 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || | ||||||||||| |||||| | || ||||| Sbjct 434 ACAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAA 375 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 ||| | ||||| | || || ||| |||| | ||||| ||||| Sbjct 374 CATTCAAAAGGAGTCTACTCTCCACCTAGTCCTCAGACTCAGAGG 330 >seq24161 Length=681 Score = 107 bits (118), Expect = 8e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||| |||| || || | || | ||| ||| || || || || |||||| Sbjct 477 AAAATGAAGAAAACTGCTGAGGACTACCTCGGTGAAGAAGTCACAGAAGCGGTTATTACT 536 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||| || || ||||||||||| |||||||| ||||||||||| | ||| ||| Sbjct 537 GTTCCAGCTTACTTTAACGATGCACAACGTCAAGCAACCAAAGATGCAGGTCGTATCGCT 596 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGC 451437 ||||| |||| || || || || ||||| ||||| || || Sbjct 597 GGTTTGGATGTAAAACGCATCATCAACGAACCAACAGCTGCGGC 640 >seq7629 Length=3052 Score = 104 bits (114), Expect = 9e-17 Identities = 158/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || |||||||||| ||||| || |||||||| || | || Sbjct 2949 AATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCCTTC 2890 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| ||| | || || ||||| || |||||||| || ||||||||||| Sbjct 2889 CGACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCA 2830 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || | | ||||| || ||||| ||| | ||||| || Sbjct 2829 ACAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTACAA 2770 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || ||||| || | ||||| ||||| Sbjct 2769 CATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCAGACTCAGAGG 2725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975080008957652