Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq24161 120 2e-21 seq7307 111 1e-18 >seq24161 Length=681 Score = 120 bits (132), Expect = 2e-21 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || ||||| | || || || ||||| |||||||| || || || | ||| Sbjct 664 TTTTTGTCGAGACCGAAAGCCAATGCCGCAGCTGTTGGTTCGTTGATGATGCGTTTTACA 605 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | | |||||| || | ||||||||||| || ||||| | ||||| ||||||||| || Sbjct 604 TCCAAACCAGCGATACGACCTGCATCTTTGGTTGCTTGACGTTGTGCATCGTTAAAGTAA 545 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || |||||||||||||| || || || ||||||| ||| | || | || |||| Sbjct 544 GCTGGAACAGTAATAACCGCTTCTGTGACTTCTTCACCGAGGTAGTCCTCAGCAGTTTTC 485 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTG 518395 |||||||| | |||| || ||||||||| ||| | ||| |||| Sbjct 484 TTCATTTTGCGCAAAACTTCTGCGGAAATTTGTGGTGGCGCCAATTTCTTG 434 >seq7307 Length=3778 Score = 111 bits (122), Expect = 1e-18 Identities = 254/375 (68%), Gaps = 8/375 (2%) Strand=Plus/Plus Query 303736 AGTCCACCATCTCTTGATCTACCTTCTGGCGCTTGTCTTGTAAGTAACTGTGTTGGTCCA 303795 ||||| |||||||| ||||| || || | | |||||||| | | || || ||||| Sbjct 354 AGTCCTCCATCTCTAGATCTTCCCTCGGTGGGCTGTCTTGTCAAAATTTGAGTAGGTCCT 413 Query 303796 CGAGCGCGTGAGTGGGCCTTGTCGCCTACCATTTGTTTCAATCTCTGATAATATGTCGGA 303855 | | | ||| || ||| || |||||||| || |||||||| ||||| | || || Sbjct 414 CTTCCTCTTGAATGAATCTTATCTCCTACCATGTGCTTCAATCTTTGATAGAAAGTTGGG 473 Query 303856 CCAATAAAAATTTTAACTGGTAATTTTTTACCATTCATTCCATTATACATAGTTTCATTA 303915 || | ||||| ||| | || || || ||| | | |||||||||||| || ||||| Sbjct 474 CCCAGGAAAATCATAAATTCAAACTTCTTTCCAGTAAATCCATTATACATTGTCTCATTT 533 Query 303916 CCCCATTCTTCATAACC-AGC-AG-CAACTAATTCATCGTTAATGGCAT-TAAGATCAAC 303971 || | || |||||| ||| || || ||||||| | || ||| || | || | Sbjct 534 CCATACCTTTAATAACCGAGCTAGTGAAGTAATTCAGAG---ATATCATCTACGCTCTA- 589 Query 303972 ACTTGTAAATGGTGTTGCATCGCCATACACTCCTTTAACTGCACATAGTTTTCCTAATAA 304031 || | || || |||||||| || | ||| || | ||| ||| ||| | ||||| Sbjct 590 ACCACTGAAAGGAGTTGCATCTCCTTCAGATCCATTCAAAGCAGATACTTTGCTCAATAA 649 Query 304032 ACATTCAATAAGTTGCCCAATAGTCATACGTTTGGGCATACAATTAGGATTGATAATAAT 304091 ||||||||| | |||||||| ||||| | || ||| | |||||| | || || Sbjct 650 ACATTCAATCAAATGCCCAATGGTCATTCTAGAAGGGATAGCGTGAGGATTAACTATCAT 709 Query 304092 ATCGGGAATTAATCC 304106 ||| || | || ||| Sbjct 710 ATCAGGCACTATTCC 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779570950148614