Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8878 140 4e-28 seq24245 113 6e-20 seq24161 89.7 7e-13 seq16922 86.0 8e-12 >seq8878 Length=3384 Score = 140 bits (154), Expect = 4e-28 Identities = 432/651 (66%), Gaps = 23/651 (4%) Strand=Plus/Minus Query 105360 GTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAATAATTGCTTTCCA 105419 ||||||||| ||||| || || |||| |||||| |||||| | |||||| || | ||| Sbjct 1909 GTCTTTGTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCA 1850 Query 105420 AATCTCCGAAGCTGGTACA-ACTTTAGTTGCGATA-CCTTCAGATTCGTATTTCTCGTAA 105477 | | ||| | || | ||| | || | |||| ||| || || | ||| Sbjct 1849 GACTTTTTGAGCC--TTCATAGTTTTGCGGCCAAGTCCTTGCTCTTCATACTTTTGGTAG 1792 Query 105478 AGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACAAAAC 105537 ||| |||||||||| | || || ||||| |||||||||| || | || ||||| || Sbjct 1791 AGAGCTTCAAACTCATCGCCATAAACGTCATAAAGACCCTTGGCTTCATTGGGACAGAAA 1732 Query 105538 AATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCT 105597 | | ||| | |||| || || | |||||||||||||| |||| ||| | | Sbjct 1731 AGAGTCCAGTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCC 1672 Query 105598 GAAAAGAGGTCTCGA-CACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAA 105656 || | ||| ||| | | | | |||||| | ||| |||||| | | || |||| | Sbjct 1671 ATGAACAAGTCACGAGCTCGTTG-CTCTTCTTTACCATGATTCTTTCTCAATTGGAGATA 1613 Query 105657 ATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAG-ACCCT-----TTACG 105710 || | ||||| |||||||| ||||| | ||||| |||| | ||||| || | Sbjct 1612 GTCAAAGATATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTTCC 1553 Query 105711 ACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAAT 105770 || ||| || | ||||||||||| || || | |||| | ||| |||| | Sbjct 1552 ACCTCCC---TGGTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAG 1496 Query 105771 ACCATCGGATGTTCCATTTGTTCCACGAATATGT-GATTTAT-TTGCACGTACATCGTGA 105828 |||| || |||||| || | | ||||| | || | | || | | | |||| Sbjct 1495 TCCATTTGAGTATCCATTGGTAC--CCTTTATGTAGCTTCCTGTAGCTCTGATGTTGTGA 1438 Query 105829 ACGTGTAA-CCCAATACCCCCAGCCCACTTACTGATACGCGC-ACACTCTTTTACTGTAT 105886 || || || || | || ||||| | |||| || | || || || || | |||| Sbjct 1437 AC-TGCAAGTCCTACTCCACCAGCACTCTTAGAAATGAGTGCTACGTTC-TTGAGAGTAT 1380 Query 105887 CGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTG 105946 |||| ||||||| |||| || ||||| || | || |||||| || |||||| | Sbjct 1379 CGTAGATACCGTGGATAGAGTCGTCCTTCATCATGAGCAAGAAACAGGAGCTCATTTGAG 1320 Query 105947 GTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAAC 105997 | |||| |||||||| ||||| ||||| ||||| |||||| ||||| ||| Sbjct 1319 GCTTGGGGGTACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAAC 1269 >seq24245 Length=617 Score = 113 bits (124), Expect = 6e-20 Identities = 274/408 (67%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 22444 TTTTATCAGGCATCTACATCAGAGCTCTACGGTAAAGTAAATGAAACTCCACAAAATGAA 22503 ||||| || || || ||||| ||| | | ||| |||||| | | ||| ||| |||| Sbjct 169 TTTTACCAAGCGTCGACATCCGAGATGTTCGGGAAAGTACAGGCTGTTCCGCAAGTTGAA 228 Query 22504 AATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGATGGGATATTGGGCG 22563 ||||||||||| || ||| || ||||| || || |||||| | ||||| | Sbjct 229 TCAACACCGTTTTATCCTCGTAGCCCGTATGGTGTCGCAAAATTGTATGCCCATTGGATG 288 Query 22564 ACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTATAATGTTCAACCAC 22623 || |||||||| | ||||| || || || ||||| || | |||||| |||| || || Sbjct 289 ACGATTAATTATCGTGAATCTTATGGAATCTTTGCTTGTAGTGGTATTTTGTTTAATCAT 348 Query 22624 GAATCACCGAGACG-GGGTGAAAACTTCGTGACACGAAAAATAAC--ACTCGGTGTCGCT 22680 ||||| ||| || ||| | || || ||||| || || || || | || |||||| Sbjct 349 GAATCTCCGTTGCGTGGGCGCGAA-TTTGTGACGCGCAAGATTACTGATTC--AGTCGCT 405 Query 22681 AATATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGAT 22740 || || | ||| || | | || | | || || || | ||||||||||| || Sbjct 406 AAAATTAAATTAGGACAATTAGATTGCCTTGAACTGGGCAATATGGATGCGAAACGCGAC 465 Query 22741 TGGGGTCATGCACGCGATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCG 22800 ||||| |||| || || || || |||||||| || || ||| ||| |||| Sbjct 466 TGGGGCTATGCGAAAGAGTATGTCGAAGGTATGTGGCGCATGTTGCAAGCAGAACAACCA 525 Query 22801 GAAGATTTTGTTATTGCAAC-AGGCGTAACAACAACCGTGAGAGAATT 22847 || |||||| | ||||| | || | | | ||| |||||||| || Sbjct 526 GATACCTTTGTTTTAGCAACAAATCGCACCGA-AACAGTGAGAGACTT 572 >seq24161 Length=681 Score = 89.7 bits (98), Expect = 7e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 7582 ATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 |||| | | || || || ||||||||| | || | ||||| || |||||||| || || Sbjct 677 ATCGCCTTTTTCTTTTTTGTCGAGACCGAAAGCCAATGCCGCAGCTGTTGGTTCGTTGAT 618 Query 7642 AATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCG 7700 || || ||| | || ||||| ||| | |||||||| || ||||| ||||| | Sbjct 617 GATGCGTTTTACA-TCCAAACCAGCGATACGACCTGCATCTTTGGTTGCTTGACGTTGTG 559 Query 7701 AATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 |||||||||||| || || || || | ||||| || ||||||| | |||||| || Sbjct 558 CATCGTTAAAGTAAGCTGGAACAGTAATAACCGCTTCTGTGACTTCTTCACCGAGGTA 501 >seq16922 Length=594 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 131783 GATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGG 131842 |||| |||||||||| ||||||||||||||| ||||||| ||||| || ||| ||| || Sbjct 393 GATGACGTGGCCGAGCGGTCTAAGGCGCCAGCTTAAGGCGCTGGTCCGAAAGGGCGTGGG 452 Query 131843 TTCAAATCCTGTCGGCATCA 131862 ||||||||| || ||||| Sbjct 453 TTCAAATCCCACCGTCATCA 472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634932582323960