Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8878 181 1e-40 seq2561 165 1e-35 seq12789 107 2e-18 >seq8878 Length=3384 Score = 181 bits (200), Expect = 1e-40 Identities = 931/1465 (64%), Gaps = 50/1465 (3%) Strand=Plus/Plus Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| || ||| ||||| || | | ||| | | || ||||| ||||||| |||| Sbjct 1175 GAAAGACCCCAGCACATGCTCCTCAGAGTCTCAGTAGGAATCCACAAGGAAGATGTTGAC 1234 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 || | | ||||| || || ||| | || ||||| || || ||||| || Sbjct 1235 TCAGCCATTGAGACTTATAACCTCATGAGCGACCGTTGGTTCACTCATGCTACACCCACT 1294 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATG---TCCAGTTGTTTCCTTATTGCAAAC 111782 ||||||||||||||||| || | || |||||| ||| ||| || || || | Sbjct 1295 CTCTTCAACGCTGGTACCCCCAAGCCTCAAATGAGCTCCTGTTTCTTGCTCATG---ATG 1351 Query 111783 AAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGT-GCCCAAATCTCAAA 111841 ||||| || || ||| | || || |||| ||||||| ||| || || | || || || Sbjct 1352 AAGGACGACTCTATCCACGGTATCTACGATACTCTCAA-GAACGTAGCACTCATTTCTAA 1410 Query 111842 GTGGGCTGGTGGTATCGGGAT-GCACATCCATGATGTCAGAGC--CAACAAGTCTCGTAT 111898 | | |||||||| | || | ||| || | | ||||||| || ||| | || Sbjct 1411 GAGTGCTGGTGGAGTAGGACTTGCAGTTC-ACAACATCAGAGCTACAGGAAGCTACATAA 1469 Query 111899 TAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCAC 111958 || ||||| ||||| | ||| |||| | |||| ||||| | || || || | || Sbjct 1470 -AG-GGTACCAATGGATACTCAAATGGACTCCTTCCCATGCTCAGAGTCTTCAATGAGAC 1527 Query 111959 AGCGCGCTATGTAAACCA---AGCTGGGCGTCGCAAGGGATCTATCGCAGTCTATCTTGA 112015 ||| | |||||| |||| || ||| | ||||| || | || |||||||||| Sbjct 1528 AGCAAGATATGTAGACCAGGGAGGTGGAAAGAGAAAGGGTTCCTTTGCCATCTATCTTGA 1587 Query 112016 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGA 112075 || |||||||| |||||| | || | || | ||| | || || ||| | || || Sbjct 1588 ACCCTGGCACGCTGATATCTTTGACTATCTCCAATTGAGAAAGAATCATGGTAAAGAAGA 1647 Query 112076 GGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 112135 | || || || | ||| | ||| ||| |||| ||| | |||||||||||||| Sbjct 1648 GCAACGAGCTCGTGACTTGTTCATGGGTCTATGGGTTCCTGATTTGTTCATGAAGAGAGT 1707 Query 112136 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCC---GGTCTCTCCGA 112192 | |||| ||| | ||| |||| || ||||| ||| | | || ||||| | | Sbjct 1708 CCAAGAGAATGGAGACTGGACTCTTTTCTGTCC---CAATGAAGCCAAGGGTCTTT---A 1761 Query 112193 TGCCGT---GGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC-GGG 112248 || ||| || || ||||||||||| |||||| |||||| || || || | | || Sbjct 1762 TGACGTTTATGGCGATGAGTTTGAAGCTCTCTACCAAAAGTATGAAGAGCAAGGACTTGG 1821 Query 112249 CGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 112308 | | || || ||| | || ||| | || ||| | || | |||| || | Sbjct 1822 CCGC-AAAACTATGAAGGCTCAAAAAGTCTGGGAGGCCATTATTGAGGCCCAAATTGAAA 1880 Query 112309 CTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 112368 |||| | || || ||||| ||||||||| | || | ||||| ||||| ||||| Sbjct 1881 CTGGAAATCCTTACATGCTCTACAAAGACCACGCCAATCGCAAGAGCAATCAGAAGAACC 1940 Query 112369 TGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 112428 | || ||||||||||| || |||||| ||||| |||| | || |||| Sbjct 1941 TTGGAACTATCAAGAGTTCTAATCTCTGTTGCGAAATTATGGAGTACACTTCTGCTGATG 2000 Query 112429 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 112488 ||| |||||||| || || || ||| | ||||| | | | || ||| Sbjct 2001 AGATTGCTGTGTGCAATCTTGCCAGTATCTCACTCCC--------TCGCTACATCACCAA 2052 Query 112489 AGACATTT--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAA 112546 | ||| || ||||||| || || ||||| | | |||| | ||||| || Sbjct 2053 TGGTGTTTTCGACCATGAAAAGCTACATTAAGTTGCCTATCAGATCACTATCAACCTGAA 2112 Query 112547 CAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACA 112606 |||| ||||||| |||| || || || ||| || | || || ||||||| ||| Sbjct 2113 CAGAATTATTGACGGAAACTTCTATCCTTGTGATGAGGCCAGAAACTCAAATATGAAACA 2172 Query 112607 CCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGC 112666 | || ||||| | ||| | |||||||| || |||| | || ||| | | | Sbjct 2173 TAGACCCATTGGAATAGGTATTCAAGGTCTGGCTGATGCTCTTATGCTTCTTAGAATTCC 2232 Query 112667 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGC 112726 || || ||| ||| | | | || | | ||||||||||| ||||| || Sbjct 2233 TTTCGAGGACGAAAGAGCTTATACATTTAACCAGGAAGTCTTTGAGACAATTTATCATGC 2292 Query 112727 CGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 112783 ||| | | ||| || || |||||| || || || ||||| | | | Sbjct 2293 TGCTAT---GCAGAGCTCATGTGACTTGGCAAAGAAGGAAGGATACTATGAGAGTTATCC 2349 Query 112784 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA--AGGTGAGACCAAG 112841 || ||||| | ||||| | | ||||||||| | ||| | || || || | Sbjct 2350 CGGCTCTCCTCTTAGTCAAGGCCAGTTCCAATTTGATCTTTGGAACGAGAAGACTCCCAC 2409 Query 112842 CTTCA-CTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 112900 || |||||||||| || ||| || | || | || | | ||| Sbjct 2410 AAACAGATACGACTGGGCAAAGCTAAAGCAAGAAGTTGTACAGCACGGAGCTAGAAACTC 2469 Query 112901 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 112960 ||| || ||||||| ||||| || || |||||| | |||||| | || ||||| || | Sbjct 2470 TCTCTTATTGGCACCCATGCCCACTGCTTCCACCTCTCAAATCCTCGGCAATAACGAGAG 2529 Query 112961 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 ||||||||||||||| || |||||||| |||||| || || ||||| || || Sbjct 2530 CTTTGAACCCTACACAACCAACATCTACACCAGAAGAGTGCTAGCAGGAGAATTCGTTTG 2589 Query 113021 TGTCAACAAGCATCTCGTGGATGAC 113045 ||| ||| || || ||| |||| Sbjct 2590 TGTGAACCCTCACCTAGTGCGTGAC 2614 >seq2561 Length=3495 Score = 165 bits (182), Expect = 1e-35 Identities = 676/1053 (64%), Gaps = 51/1053 (5%) Strand=Plus/Minus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 ||||| ||||| | ||| || ||||| || | ||||| | | ||| | || |||| Sbjct 2475 ACATGCTCATGAGAGTCAGCATTGGTATTCACAAGCAAGATTTAGCTTCAGCATTTGAGA 2416 Query 111679 CATACGA---CAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTTCAAC 111734 |||| || || || | | ||||| ||| ||||| || || || || |||||| Sbjct 2415 CATATGATCTCATGAGCTAGCTGTGGT----TCACTCACGCCACTCCCACTCTTTTCAAC 2360 Query 111735 GCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAAC----AAGGAGGA 111790 |||| || || | || || ||| |||| || | || |||| || |||||||| Sbjct 2359 TCTGGAACTCCCAAGCCTCAGATG---AGTTCTTGC-TTCTTGCTGACTGTCAAGGAGGA 2304 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || || |||| || | || ||||| | || ||| ||||| ||| ||||| Sbjct 2303 CTCCATAGATGGAATATTCGAAACTCTGAAACAAATTGCAATCATCTCTAAGGCTGCTGG 2244 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 ||| ||||| | | || ||| ||||||| | || ||| ||||||||||| Sbjct 2243 TGGCATCGGTGTTTCCGTCTCAGATATCAGAGCTGCTGACTCCTATATCAGAGGTACAAA 2184 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||| | || | || | ||||| |||||| || || || | ||| || | || || Sbjct 2183 TGGATACTCCAACGGACTCATTCCTATGCTTAAGGTCTTCAATGACACCGCAAGATACGT 2124 Query 111971 AAACCAAGCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | | || | ||| || | ||| || || |||| |||||| | |||||||||||| Sbjct 2123 AGATCAGGGTGG-CGGCAAAAGAAAAGGTGCTTTCGCCGTCTATGTAGAGCCATGGCACA 2065 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 || ||| || ||||| || ||||| ||||| ||| | || ||| | | Sbjct 2064 GTGACATCTATGACTTCCTCCAGCTGCGTAAAAACCACGGTAAGGAAGAGAATAGAGCTC 2005 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 112146 | || | |||| ||||||||||||||| || | |||||| ||||||||| | | | Sbjct 2004 GTGACTTGTTCTACGCTCTCTGGATTCCTGACTTGTTCATGCGAAGAGTTGAGCACAACG 1945 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGG 112206 | ||| ||||| | ||||| || || || || ||| || | ||| || | Sbjct 1944 AAGACTGGACTCTCATGTGTCCCAACGAGTGCCCAGGCCTCACCACCACTTGGGGAGAAG 1885 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGA-------GGAAGAAAGTCGGGCGACTGCGACG 112259 | |||||| |||||| |||| || ||| | |||| |||| | | Sbjct 1884 AATTTGAAAAGCTCTACGAGGAGTATGAACGCACTGGACG-CGGTCGCAAGACTATTAAG 1826 Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 ||| | || | | || ||| || || | ||||||||| |||||||| || || Sbjct 1825 --GCCCGATG--GCTTTGGGGACAG--ATAGTAGAGTCTCAAATTGAGACTGGAACTCCT 1772 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 || ||||| |||||||| || || || |||| || | | || | || || Sbjct 1771 TACATGCTCTACAAAGATGCTTGCAATAGAAAGTCCAACTAGTAAAACCTAGGAACCATT 1712 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 ||||| || || || || || || ||| | || || ||| ||||| | |||||| Sbjct 1711 AAGAGCTCGAATCTTTGCACTGAGATCGTAGAGTTCACAAGTCCTGATGAAATAGCTGTG 1652 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-----GACAAAGACAT 112494 || || || || || || |||||| | || | || ||| || |||| || Sbjct 1651 TGCAATCTTGCCTCTATTGCTCTC----AATAGATTCGTCAAGAAGGAGGAGCAAGA-AT 1597 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || ||||| ||||| |||| || || || | |||| || || ||||| | | ||| Sbjct 1596 ACGACTATGAGAAACTGCACGCTGTCACTAAGAGAATCACTAAGAATCTAAATAAAATTA 1537 Query 112555 TTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 | |||| |||| || || || |||| |||||||| || ||| | | ||| | | Sbjct 1536 TAGATAACAATTACTATCCAGTCGCTGAG---GCTCGTAACTCAAATCTTAAGCACAGAC 1480 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 | ||||| ||||||| ||||| | || |||| Sbjct 1479 CTATTGGAATCGGTGTGCAAGGGTTTGCCGATG 1447 >seq12789 Length=2278 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| || ||| |||| | || || || ||| ||||| ||||||||||| || || | Sbjct 934 CCTTCGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTT 875 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | ||||||||||| || || |||||||| || || ||||||||||| Sbjct 874 TCTGCTCCATCTTCTGGCTCAAGAAACGTGGCCTCATGCCCGGCCTGACCTTCTCCAACG 815 Query 102292 AGCTTATCTCTCGTGACGAGGG 102313 || | ||||| ||||| ||||| Sbjct 814 AGTTGATCTCCCGTGATGAGGG 793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620546718717680