Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8878 208 9e-49 seq2561 149 7e-31 seq12789 82.4 9e-11 >seq8878 Length=3384 Score = 208 bits (230), Expect = 9e-49 Identities = 508/758 (67%), Gaps = 19/758 (3%) Strand=Plus/Minus Query 110296 GCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAG 110355 |||||||||||||||| | |||| || ||||| |||| |||||| ||| | Sbjct 2022 GCAAGATTGCACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGA 1963 Query 110356 TTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTG-GAGTTGCATGCATCCTT 110414 || |||||||| || || | |||||||||||| ||| || | || || || || Sbjct 1962 TTAGAACTCTTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGG-TCTTT 1904 Query 110415 ATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATC 110474 ||||||||||| || | |||||||| | || | || | |||||||| ||| || | Sbjct 1903 GTAGAGCATGTAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTT 1844 Query 110475 GGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTC 110534 || | |||| | | || |||| ||| || ||||| ||| | | || Sbjct 1843 TTGAGCCTTCATAGTTTTGCGGCCAAGTCCTTGCTCTTCATACTTTTGGTAGAGAGCTTC 1784 Query 110535 AAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCA 110594 ||| || | || || || ||| |||||||||| || | | ||||||||| || | ||| Sbjct 1783 AAACTCATCGCCATAAACGTCATAAAGACCCTTGGCTTCATTGGGACAGAAAAGAGTCCA 1724 Query 110595 ATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAG 110654 | |||| ||| | || ||||||||||||| ||||||| ||| | || ||| | Sbjct 1723 GTCTCCATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGAACAA 1664 Query 110655 GTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGAT 110714 |||||| || |||||| | ||| || || | | | | | |||| | ||| Sbjct 1663 GTCACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAAAGAT 1604 Query 110715 ATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC---GACGACCCGCCTG 110771 ||| | |||||| ||||| ||||||| || | ||| ||||| | | ||| |||| Sbjct 1603 ATCAGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTTCCACCTCCCTG 1544 Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831 || ||||| | |||||| |||||||||| |||||||| |||| | ||||| || | Sbjct 1543 GTCTACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCCATTTGAGTA 1484 Query 110832 ACCATTTGTACCCCTAATTCTGGACTTATTG--GCACGAATGTCGTGGATATGC-ATACC 110888 ||||| |||||| | || | ||| || || | |||| || || ||| | || Sbjct 1483 TCCATTGGTACCCTTTATGTAG--CTTCCTGTAGCTCTGATGTTGT-GAACTGCAAGTCC 1427 Query 110889 AATACCACCCGCCCACTTACTAATTTGTGC-ACACTCTGTGAGTGTACCATAAATACCAT 110947 | ||||| || | |||| ||| |||| || ||| |||| ||| | || ||||| | Sbjct 1426 TACTCCACCAGCACTCTTAGAAATGAGTGCTACGTTCT-TGAGAGTATCGTAGATACCGT 1368 Query 110948 CAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGA---CATCTGAGGACGAGGCG 111004 || || || |||| | || || ||| || | || ||| ||||| || | Sbjct 1367 GGATAGAGTCGTCCTTCAT---CATGAGCAAGAAACAGGAGCTCATTTGAGGCTTGGGGG 1311 Query 111005 TTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 | || || |||||||| || ||||| |||||| ||||| Sbjct 1310 TACCAGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAAC 1273 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||| || ||||||||||| || | ||| || ||||| |||||||| | ||||| Sbjct 2557 GTAGATGTTGGTTGTGTAGGGTTCAAAGCTCTCGTTATTGCCGAGGATTTGAGAGGTGGA 2498 Query 109812 AGCTGTGGGCATGGGAGCCA 109831 ||| ||||||||||| |||| Sbjct 2497 AGCAGTGGGCATGGGTGCCA 2478 >seq2561 Length=3495 Score = 149 bits (164), Expect = 7e-31 Identities = 612/950 (64%), Gaps = 25/950 (3%) Strand=Plus/Plus Query 110199 ATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTT 110258 ||| |||||||| || | |||| |||| | || ||||| || || ||| | || Sbjct 1544 ATTTAGATTCTTAGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTATTCTTG 1603 Query 110259 CGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTC 110318 | |||||| ||||| || | |||||||||||| |||||||||||||||| | || Sbjct 1604 CTCCTCCTTCTTGACGAATCTATTGAGAGCAATAGAGGCAAGATTGCACACAGCTATTTC 1663 Query 110319 GTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAA 110378 || ||| | || | || || || || | || || ||||||||| || | Sbjct 1664 ATCAGGACTTGTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGTTCCTAG 1723 Query 110379 GTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 ||| | || || || || ||||| ||||| || ||||||||||| || || ||||| Sbjct 1724 GTTTTACTAGTTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGTTCCAGT 1783 Query 110439 TTCCGTCTGTGACTTGAGAAT--GGCCTTCCATA--CATCGGCGGCGGGGACAGT--TGC 110492 || | || |||| | || | || ||| | |||||| || | ||| ||| Sbjct 1784 CTCAATTTGAGACTCTACTATCTGTCC--CCAAAGCCATCGG--GCCTTAATAGTCTTGC 1839 Query 110493 GTTAGCGAGACC--TTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTAC 110550 | | || | || | | | || |||| ||| | | |||||||| | ||| | Sbjct 1840 G--ACCGCGTCCAGTGCGT--TCATACTCCTCGTAGAGCTTTTCAAATTCTTCTCCCCAA 1895 Query 110551 ACATCAGAAAGACCCTTCGC-CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTC 110609 | || || | || || || |||||| | ||| | ||| | | | | ||| Sbjct 1896 GTGGTGGTGAGGCC-TGGGCACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTGCTC 1954 Query 110610 AACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGC 110669 ||| || |||||||| |||||||||||| | || |||| | |||||| | | Sbjct 1955 AACTCTTCGCATGAACAAGTCAGGAATCCAGAGAGCGTAGAACAAGTCACGAGCTCTATT 2014 Query 110670 CTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGG 110729 |||||| | ||| ||||| || |||| | ||||| ||| || ||||||||| Sbjct 2015 CTCTTCCTTACCGTGGTTTTTACGCAGCTGGAGGAAGTCATAGATGTCACTGTGCCATGG 2074 Query 110730 TTCGAGATAGACAGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTG 110785 || | |||||| |||| | || ||| | || || |||| | || || | || Sbjct 2075 CTCTACATAGACGGCGAAAGCACCTTTTCTTTTGCCG-CCACCCTGATCTACGTATCTTG 2133 Query 110786 CTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCC 110845 | ||| ||||||||||| | ||||||||||| | ||| | ||| | ||||||||||| | Sbjct 2134 CGGTGTCATTGAAGACCTTAAGCATAGGAATGAGTCCGTTGGAGTATCCATTTGTACCTC 2193 Query 110846 TAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACT 110905 | || ||| | | || | || || || | ||| || ||||| || || Sbjct 2194 TGATATAGGAGTCAGCAGCTCTGATATCTGAGACGGAAACACCGATGCCACCAGCAGCCT 2253 Query 110906 TACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 || || |||| | | | || || | | || ||||| || || || ||||| Sbjct 2254 TAGAGATGATTGCAATTTGTTTCAGAGTTTCGAATATTCCATCTATGGAGTCCTCCTTGA 2313 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 | | | ||||||||| ||||||||| || ||||| | ||||| || || | Sbjct 2314 CAGTCAGCAAGAAGCAAGAACTCATCTGAGGCTTGGGAGTTCCAGAGTTGAAAAGAGTGG 2373 Query 111026 GTGTCGCATGAATGAA-CAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT 111084 | || || ||| |||| || | | | | ||| | ||||| || | ||| || | | Sbjct 2374 GAGTGGCGTGAGTGAACCACAGC-TAGCTCATGAGATCATATGTCTCAAATGCTGAAGCT 2432 Query 111085 ACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGG 111134 | ||||| ||||||||||||| |||| ||||| ||| | |||||| Sbjct 2433 AAATCTTGCTTGTGAATACCAATGCTGACTCTCATGAGCATGTGTTGAGG 2482 >seq12789 Length=2278 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 119514 ccTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||||| | ||| || |||| || || |||||||| || | |||| Sbjct 793 CCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTC 852 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || ||| || || |||||||||||||||||| ||||| Sbjct 853 TTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAG 912 Query 119634 GCGAATAGACGCTCAGCAAA 119653 || | || | ||| || || Sbjct 913 GCAACAAGTCTCTCGGCGAA 932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588790332678200