Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq8878 178 2e-39 seq2561 143 3e-29 seq12789 116 4e-21 >seq8878 Length=3384 Score = 178 bits (196), Expect = 2e-39 Identities = 966/1514 (64%), Gaps = 84/1514 (6%) Strand=Plus/Minus Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 || || ||||| || || |||||| |||||||| || |||||||||||||||| Sbjct 2586 ACGAATTCTCCTGCTAGCACTCTTCTGGTGTAGATGTTGGTTGTGTAGGGTTCAAAGCTC 2527 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || ||||| || | |||||| | |||||| || || ||||| ||||||| || ||| | Sbjct 2526 TCGTTATTGCCGAGGATTTGAGAGGTGGAAGCAGTGGGCATGGGTGCCAATAAGAGAGAG 2467 Query 106025 TTACGAAGACC---CTTTTC--CTTGATGCGTT--CCTTGAGAACATCCCAGTCGTAGTT 106077 || | | || || | | ||| ||| || | ||| |||||||||| | Sbjct 2466 TTTCTAGCTCCGTGCTGTACAACTTCTTGCTTTAGCTTTG-------CCCAGTCGTATCT 2414 Query 106078 GAGCTTGGT----TTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAG 106133 | ||| ||| | |||| | | ||||||||| | | ||||| |||| Sbjct 2413 GTTTGTGGGAGTCTTCTCGTTCCAA-AGATCAAATTGGAACTGGCCTTGACTAAGAGGAG 2355 Query 106134 AACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA--GCCAATTCACA---GCTCGCCTC 106188 | || | | |||||||| | |||| |||| ||||| ||||| |||| | Sbjct 2354 AGCCGGGATAACTCTCATAGTATCCTTC--CTTCTTTGCCAAGTCACATGAGCTC---TG 2300 Query 106189 CAGGGATGCGTGATACATGGTTTCAAAGA--TACGAGC---ATTCAT---CTCCTTGGCT 106240 || | || ||||| || || ||||||| | | | || || ||| || | Sbjct 2299 CATAGCAGCATGATAAATTGTCTCAAAGACTTCCTGGTTAAATGTATAAGCTCTTTCG-- 2242 Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 106300 || || ||| ||| | || ||| || | |||| || |||||||||| ||| Sbjct 2241 TCCTC-GAAAGGAATTCTAAGAAGCATAAGAG-----CATCAGCCAGACCTTGAATACCT 2188 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360 | ||||| ||||| ||| |||||| || |||| || ||| ||||| || ||| Sbjct 2187 ATTCCAATGGGTCTATGTTTCATATTTGAGTTTCTGGCCTCATCACAAGGATAGAAGTTT 2128 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 | |||||| | || ||| || || | || | | | | || ||| || |||||| Sbjct 2127 CCGTCAATAATTCTGTTCAGGTTGATAGTGATCTGATAGGCAACTTAATGTAGCTTTTCA 2068 Query 106421 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 106480 | || ||| | | | ||| || || || | ||| || | |||| Sbjct 2067 TGGTCGAAAACACCATTGG------TGATGTAGCGAGGGAGTGAGATACTGGCAAGATTG 2014 Query 106481 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC 106540 || ||||| ||||||| | |||||||| | |||||| ||| | || |||||| Sbjct 2013 CACACAGCAATCTCATCAGCAGAAGTGTACTCCATAATTTCGCAACAGAGATTAGAACTC 1954 Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600 || || || || | ||||| || || ||||| ||| || |||||||||||| Sbjct 1953 TTGATAGTTCCAAGGTTCTTCTGATTGCTCTTGCGATTGGCGTGGTCTTTGTAGAGCATG 1894 Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGC--TG 106658 || || | || || || | || | || | ||| |||| ||| || | || | Sbjct 1893 TAAGGATTTCCAGTTTCAATTTGGGCCTCAATAATGGCCTCCCAGACTTTTTGAGCCTTC 1834 Query 106659 GTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCT 106718 || | ||| | | |||| | | | || |||||| |||||| ||||||||||| | Sbjct 1833 ATAGTTTTGCG--GCCAAGTCCTTGCTCTTCATACTTTTGGTAGAGAGCTTCAAACTCAT 1776 Query 106719 CACCCACCGCGTCGGAGAGACC--TGG-TGCCTTGTCTGGACAGAAAAGAGACCATTGAC 106775 | || |||| | ||||| ||| | | ||| ||||||||||||| ||| | | Sbjct 1775 CGCCATAAACGTCATAAAGACCCTTGGCTTCATTG---GGACAGAAAAGAGTCCAGTCTC 1719 Query 106776 CACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG--GGATGAAAAGAGATC 106833 || ||| | || | ||||||||| | || |||| ||| || ||||| | || || Sbjct 1718 CATTCTCTTGGACTCTCTTCATGAACAAATCAGGAACCCATAGACCCATGAACA-AG-TC 1661 Query 106834 TCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATC 106893 | | || |||||| | ||| || || || || | || | || | |||||| Sbjct 1660 ACGAGCTCGTTGCTCTTCTTTACCATGATTCTTTCTCAATTGGAGATAGTCAAAGATATC 1601 Query 106894 CGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGCT---TGATT 106950 |||||||| || |||||||||| || | || ||||||| ||| || || | Sbjct 1600 AGCGTGCCAGGGTTCAAGATAGATGGCAAAGGAACCCTTTCTCTTTCCACCTCCCTGGTC 1541 Query 106951 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 107010 |||||| | ||||| | || || || | ||||| |||| | |||| ||| | || Sbjct 1540 TACATATCTTGCTGTCTCATTGAAGACTCTGAGCATGGGAAGGAGTCCATTTGAGTATCC 1481 Query 107011 ATTTGTCCCCCGAATACGAGATTTAT-TGGCTCTCACATCATGGATGTGCA--TCCCAAT 107067 ||| || ||| || || || | | ||||| | | | || |||| ||| | | Sbjct 1480 ATTGGTACCCTTTAT-GTAGCTTCCTGTAGCTCTGATGTTGT-GAACTGCAAGTCCTACT 1423 Query 107068 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 107127 || ||||| | ||| || || | || | | | ||||| | |||||||||| ||| Sbjct 1422 -CCACCAGCACTCTTAGAAATGAGTGCTACGTTCTTGAGAGTATCGTAGATACCGTGGAT 1364 Query 107128 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA---CATCTGCGGTCTTGGTGTACC 107184 ||||| ||||| | || || ||| ||| ||| ||| || || | || ||||| Sbjct 1363 AGAGTCGTCCTTCAT---CATGAGCAAGAAACAGGAGCTCATTTGAGGCTTGGGGGTACC 1307 Query 107185 AGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGT 107244 ||| |||||||| || ||||| || ||| ||||| || | | ||| || || || Sbjct 1306 AGCGTTGAAGAGAGTGGGTGTAGCATGAGTGAACCAACGGTCGCTCATGAGGTTATAAGT 1247 Query 107245 CTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTA 107304 ||| | | | || |||| |||||| |||||| || | | || | | | ||||| Sbjct 1246 CTCAATGGCTGAGTCAACATCTTCCTTGTGGATTCCTACTGAGACTCTGAGGAGCATGTG 1187 Query 107305 TTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGCTCTTCTCAAGGGTT 107362 |||||| |||| | || |||| | || | |||| | ||| ||||||||| Sbjct 1186 CTGGGGTCTTTCAACGATCTTGCCGTTGA--CTTTGAGCAAGTAGGAGCGCTCAAGGGTC 1129 Query 107363 TTGAGACCAAAGTA 107376 |||| || ||||| Sbjct 1128 TTGAATCCGAAGTA 1115 >seq2561 Length=3495 Score = 143 bits (158), Expect = 3e-29 Identities = 747/1161 (64%), Gaps = 47/1161 (4%) Strand=Plus/Plus Query 106269 AAATAAA-TACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 106327 || |||| | |||| || | ||||| ||||| | |||||||||||||| | ||| Sbjct 1437 AATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAATAGGTCTGTGCTTAAGATTT 1496 Query 106328 GACTTTCGCGCAGTCTCAACG---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 106384 || || || || |||| || ||||| |||| | || || | | |||||||| Sbjct 1497 GAGTTACGAGC---CTCAGCGACTGGATAGTAATTGTTATCTATAATTTTATTTAGATTC 1553 Query 106385 TTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAG--TGCGAGTCTCTT 106442 || || | |||| |||| | || ||||| ||||| || | ||| || ||| Sbjct 1554 TTAGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTATTCTTGCTCCTC-CTT 1612 Query 106443 CATTGACATA-CTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 106501 | ||||| | || | || | || || || || | |||||| ||||| | ||||| | Sbjct 1613 C-TTGACGAATCTATTGA-GAGCAATAGAGGCAAGATTGCACACAGCTATTTCATCAGGA 1670 Query 106502 TCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 106561 |||| |||||| || || || || | || || |||||||| || || | || | Sbjct 1671 CTTGTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGTTCCTAGGTTTTAC 1730 Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 | ||| |||| | ||||| ||||| |||||||||||||| || || || ||||| | Sbjct 1731 TAGTTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGTTCCAGTCTCAATT 1790 Query 106622 TGTGACTTGAGAAT-TGCCTTCCACA--CATCGGCGGCTGGTACAATGGCGTTG---GCC 106675 || |||| | || || | ||| | |||||| | || ||| | ||| | Sbjct 1791 TGAGACTCTACTATCTGTC-CCCAAAGCCATCGG-GCCT----TAATAGTCTTGCGACCG 1844 Query 106676 CGTCC-CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGA 106734 ||||| | || || |||| |||||| |||||| || || ||| | | || Sbjct 1845 CGTCCAGTGCG-TTCATACTCCTCGTAGAGCTTTTCAAATTCTTCTCCCCAAGTGGTGGT 1903 Query 106735 GAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTT 106794 ||| ||||| || || ||||| | |||| ||| | | | |||||| | Sbjct 1904 GAGGCCTGGGCACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTGCTCAACTCTTCG 1963 Query 106795 CATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTC 106854 |||||| | ||| |||||||| || | | || | || | | | | |||||| | Sbjct 1964 CATGAACAAGTCAGGAATCCAGAGAGCGTAGAACAAGTCACGAGCTCTATTCTCTTCCTT 2023 Query 106855 ACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 106914 ||| ||||| || | || ||||| || ||| || |||||||||||| | ||| Sbjct 2024 ACCGTGGTTTTTACGCAGCTGGAGGAAGTCATAGATGTCACTGTGCCATGGCTCTACATA 2083 Query 106915 GACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGT 106970 ||| |||| || || |||| | || ||| | |||| ||| || | || ||| | | Sbjct 2084 GACGGCGAAAGCACCTTTTCTTTTGCCG-CCACCCTGATCTACGTATCTTGCGGTGTCAT 2142 Query 106971 TAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAG 107030 | || || |||||| ||||| | || | || | |||||||| || | ||| | Sbjct 2143 TGAAGACCTTAAGCATAGGAATGAGTCCGTTGGAGTATCCATTTGTACCTCTGATATAGG 2202 Query 107031 ATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTT 107090 | | | ||||| | ||| || | | || || || ||||| ||| ||||| Sbjct 2203 AGTCAGCAGCTCTGATATCTGAGACGGAAACACCGATGCCACCAGCAGCCTTAGAGATGA 2262 Query 107091 GCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTT----GTTGGCG 107146 ||| | | |||||| | | || || | || ||||||||||| || || Sbjct 2263 TTGCAATTTGTTTCAGAGTTTCGAATATTCCATCTATGGAGTCCTCCTTGACAGTCAGCA 2322 Query 107147 ATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTT 107206 | ||| ||| |||| |||||| || | || || |||| ||||| || || || || Sbjct 2323 AGAAGCAAG-AACT---CATCTGAGGCTTGGGAGTTCCAGAGTTGAAAAGAGTGGGAGTG 2378 Query 107207 GCGTGAATGAA-CATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTC 107265 |||||| |||| || | | | | ||| || |||||||| || | ||| | | || Sbjct 2379 GCGTGAGTGAACCACAGC-TAGCTCATGAGATCATATGTCTCAAATGCTGAAGCTAAATC 2437 Query 107266 TTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGAT 107325 || | ||| || || ||| || | ||| | ||||| ||| ||| | |||| | | | Sbjct 2438 TTGCTTGTGAATACCAATGCTGACTCTCATGAGCATGTGTTGAGGTCTCTCCAAAATGGT 2497 Query 107326 GCCATCGAGCCGTTGA-AGAT-AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAA 107383 | | | | || || | || | ||||||| || | ||| ||| ||||||||| || | Sbjct 2498 G-GAACCATCCTTTAATAGGTAAGCTCTT-TCTAATGTTCTGAACCCAAAGTAATCATAG 2555 Query 107384 TCATAGTCCCGCTTCGTATCA 107404 | ||||| || ||||| || Sbjct 2556 TTGTAGTCACG-ATCGTAGCA 2575 >seq12789 Length=2278 Score = 116 bits (128), Expect = 4e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| | ||||||||| ||||| || | || || |||||| ||||| |||||||| || Sbjct 786 GTGCATACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCC 845 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 || ||||| | ||| | || | |||||| || |||||||||||||| ||||||||| Sbjct 846 ACGTTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGC 905 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGC 117436 || || |||| ||| | ||||||||||| || Sbjct 906 TGCGAAGGCAACAAGTCTCTCGGCGAAGGCGC 937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589794815927560