Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq7630 167 5e-36 seq18359 159 8e-34 seq18358 98.7 2e-15 seq8878 93.3 9e-14 >seq7630 Length=872 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||||| || | ||| || || ||||| || ||||| ||||| || | |||||| Sbjct 275 TCTGAGTCTCAGGACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGT 334 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| |||||||| |||||||||||||||| |||||| || || ||||| || Sbjct 335 TCTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACC 394 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || ||| |||||||| ||||| || || || || ||||| Sbjct 395 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAG 454 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | || || ||||| | |||||| Sbjct 455 AGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCAT 496 >seq18359 Length=859 Score = 159 bits (176), Expect = 8e-34 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || ||||| ||||| ||||| |||||||| || || ||| ||||| Sbjct 332 TCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGT 391 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| |||| ||| || || |||||||||| ||||| || || || || || Sbjct 392 TCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCC 451 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||||| || || || || ||||| |||||||| || ||| || || || Sbjct 452 CTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAG 511 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | |||||||| || | ||| ||||| || | ||||||| Sbjct 512 TGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | ||| | |||||||||||||| || ||||| ||||| ||| | || Sbjct 560 TCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGCTTAAGGT 619 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| || ||||| || ||||| || |||| ||||| || || || ||||| Sbjct 620 TCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATGCC 679 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || ||||| ||||||||||||||||||||| || || || || | Sbjct 680 CTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCCAA 739 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | || || ||||| | |||||| Sbjct 740 AGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq18358 Length=408 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 |||||| || ||||| || |||| |||||||| || || || ||||| ||||| ||||| Sbjct 406 CTGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGAAT 347 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 || |||||| || ||||||||||| || || || || ||||| | |||||||| Sbjct 346 CTTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAACATCGAGGGTGATGGTCTTTCC 287 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| ||||| | || ||| Sbjct 286 AGTGAGGGTTTTGACGAAAATTTACAT 260 >seq8878 Length=3384 Score = 93.3 bits (102), Expect = 9e-14 Identities = 182/265 (69%), Gaps = 3/265 (1%) Strand=Plus/Plus Query 160606 TTCC-GATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCTGTCCCA 160664 |||| ||| | |||||||||||||| |||| ||||| || |||| ||||||||||||| Sbjct 1683 TTCCTGATTTGTTCATGAAGAGAGTCCAAGAGAATGGAGACTGGACTCTTTTCTGTCCCA 1742 Query 160665 ATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATGAAAGAT 160724 ||||||| || ||| |||| |||||||| ||||| || |||| || ||| | Sbjct 1743 ATGAAGCCAAGGGTCTTTATGACGTTTATGGCGATGAGTTTGAAGCTCTCTACCAAAAGT 1802 Query 160725 ACGAAAAAGAGGGA-AGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGCATCACATC 160783 | ||| | | ||| ||| ||| | ||||||| ||| || | ||| | ||| Sbjct 1803 ATGAAGAGCAAGGACTTGGCCGCAAAACT-ATGAAGGCTCAAAAAGTCTGGGAGGCCATT 1861 Query 160784 CTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCATCTGTCGC 160843 ||| |||||| | || || | || | || ||||| || | | |||| Sbjct 1862 ATTGAGGCCCAAATTGAAACTGGAAATCCTTACATGCTCTACAAAGACCACGCCAATCGC 1921 Query 160844 AAGAGTAACCAGAAGAACTTTGGAA 160868 ||||| || ||||||||| |||||| Sbjct 1922 AAGAGCAATCAGAAGAACCTTGGAA 1946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109123106038973