Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5686 149 5e-30 seq9607 107 2e-17 seq24161 102 7e-16 seq18359 98.7 8e-15 seq7630 93.3 3e-13 >seq5686 Length=5338 Score = 149 bits (164), Expect = 5e-30 Identities = 313/460 (68%), Gaps = 5/460 (1%) Strand=Plus/Plus Query 368584 GATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGAT 368643 || ||||| | ||||||| || | ||||||| ||| |||||| | ||| | ||| Sbjct 3118 GACTGGTGCTTCTCAAGAAACAGATACTGGGGAAATCCTATTCCAATTTGGGCAAGCGAT 3177 Query 368644 GATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGG-TGT 368702 ||| ||||| || |||||| | ||||||||||| ||| | |||| |||||||| ||| Sbjct 3178 GATATGGAAGAGATCGTTTGTGTTGGTTCAATTAAGGAACTCTAAGAGTTATCTGGATGT 3237 Query 368703 GCAAAATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAAGAA 368762 | | | |||| ||| | || | || | ||||||||||| | |||||||||||| | Sbjct 3238 G-AGCAGATTACCGATCTTCACAGAGAGAGCATTGATCACATCACTATTCCATCAAAGCA 3296 Query 368763 AGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTC 368822 ||||||||| | || || || || ||| || || |||||||| || || ||||| Sbjct 3297 AGGAAAAGGAGTTCTGAGAAGAATTCCAGAAGTGTTTGACTGCTGGTTCGAGTCTGGTTC 3356 Query 368823 TATGCCTTATGGTCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATGATAA 368882 ||||||| | |||| | || ||||| ||| | | | || | | | | || Sbjct 3357 CATGCCTTTCGCTCAAGTCCACTATCC-TTTCTCTATGAATGATGAGGAGTTCAACA-AA 3414 Query 368883 AGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTATAC 368942 ||||| | || | ||| | | || | | |||||||| | |||||||| ||||| Sbjct 3415 AGATTCCCT-GCCAACTTTATCGCCGAGGGATTAGATCAAACTAGAGGTTGGTTCTATAC 3473 Query 368943 CCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTAAC 369002 | | ||| | ||||||||| || | | | |||| |||| | || |||| Sbjct 3474 TTTGATGGTAATCTCCACAGCTGTTAAGAAGAGAGAACCTTTCCAAAACTTGATTGTAAA 3533 Query 369003 TGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAA 369042 |||||| ||| ||| ||||| || |||||||||||| Sbjct 3534 TGGTATCGTTCTTGCCAGCGATGGACAGAAGATGTCAAAA 3573 >seq9607 Length=5752 Score = 107 bits (118), Expect = 2e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 390847 TCATTGGCATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACT 390906 || |||| | |||| || || |||||||||| || | | ||||| | ||||| Sbjct 2936 TCTTTGGAAGTTCTGACAGTTCCATCATACTTCACCATCACATCTTCCATTGCTTTAATC 2877 Query 390907 AATTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCT 390966 ||| ||||||| || || || || |||||||| |||| |||||||| ||||| || ||| Sbjct 2876 AATCTTCTTTGAATGTAGCCTGTCTCTGCAGTCTTAACTGCAGTATCAATAAGTCCCTCT 2817 Query 390967 CTTCCTGCCATAACTTGGAAGAAAAATTC 390995 |||||| ||||| | ||||||||||| || Sbjct 2816 CTTCCTCCCATAGCGTGGAAGAAAAACTC 2788 >seq24161 Length=681 Score = 102 bits (112), Expect = 7e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 ||| ||||||| || || || || || ||||| ||||| || ||||| || |||||||| Sbjct 507 GGTGAAGAAGTCACAGAAGCGGTTATTACTGTTCCAGCTTACTTTAACGATGCACAACGT 566 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 ||||| || |||||||| || ||||| ||||| | |||| || || ||||| ||| Sbjct 567 CAAGCAACCAAAGATGCAGGTCGTATCGCTGGTTTGGATGTAAAACGCATCATCAACGAA 626 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 || || ||||| ||| | || | || || || ||| Sbjct 627 CCAACAGCTGCGGCATTGGCTTTCGGTCTCGACAAA 662 >seq18359 Length=859 Score = 98.7 bits (108), Expect = 8e-15 Identities = 160/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGT 563312 ||||| | ||| || || || || ||| || || ||| || || || ||| ||||| Sbjct 333 CTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTC-GCTGAGAGT 391 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 ||| ||||||||| | ||||||||||| |||||||| || ||||| || || ||||| Sbjct 392 TCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCC 451 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCG 563430 ||||| ||||| || || ||| || ||| || || || || || | || ||| Sbjct 452 CTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCG-AC-GTCG 509 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || || || ||||| || || ||||||||||| Sbjct 510 AGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCAT 553 >seq7630 Length=872 Score = 93.3 bits (102), Expect = 3e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| ||||||||| |||||||| || || || || || |||||||| Sbjct 314 AATGTTGTAGTCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCT 373 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||| ||||| || ||||| ||||| || || || || || || || ||| || || Sbjct 374 TTGTTGATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGT 433 Query 563412 ATCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTG 563471 ||| | | | | || ||||| | || || || || || || || ||||| ||||| Sbjct 434 ATCTGAGGGCTCAACATCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 493 Query 563472 CATA 563475 |||| Sbjct 494 CATA 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027962305542310