Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq18359 111 1e-19 seq7630 96.9 3e-15 >seq18359 Length=859 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||| || || ||||| || ||||| || || || ||| || |||||| |||| || Sbjct 345 ACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTGAGAGTTCTACCATCTTCA 404 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | | ||| || ||||| || | | |||||||||||| || || || ||||| ||||| Sbjct 405 AGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGG 464 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||||| || | ||| || || || |||| || || Sbjct 465 ATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGACGTCGAGTGTGATTGTCTTT 524 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | ||| |||||||| || ||||| Sbjct 525 CCGGTGAGAGTCTTTACAAAAATTTGCAT 553 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||||||||| | | ||| |||||||| || || || || || || ||||| ||| Sbjct 553 TTCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGC 612 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| | || || | |||||| || || || |||| | |||||||||||| | Sbjct 613 TTAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTG 672 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | ||||| || || || || ||||| || || | || | |||||||| | || | Sbjct 673 GGATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAA 732 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||| | || || ||||| | || || || || || ||||| Sbjct 733 CGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq7630 Length=872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | | | || || ||||||||||| || || || || ||||||||| | Sbjct 498 CCTCCTCTAAGTCTGAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCGCTG 557 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || | |||||| || ||||| || | | |||||| ||||| || Sbjct 558 AGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTGTTGGTCGGGTGGG 617 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || || || ||| | || | ||||| || | || || Sbjct 618 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGATGGCTCAACG 677 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | |||| || || ||||| | || || || || || |||||| Sbjct 678 TCCAAGGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTGCATG 725 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || ||||| || || || || || ||||| || | | |||||| | || || Sbjct 288 ACCAAGTGGAGGGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTTCCGTCTTCA 347 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| ||||| || || | | ||||||||||| ||||| ||||| || || || Sbjct 348 AGCTGCTTGCCTGCGAAGATAAGTCTTTGTTGATCGGGGGGAATACCTTCCTTGTCCTGG 407 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || || | || | || || || | || || |||||||||| || ||| Sbjct 408 ATCTTGGCCTTCACGTTCTCGATGGTATCTGAGGGCTCAACATCAAGAGTGATGGTCTTG 467 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || || ||||| Sbjct 468 CCGGTGAGGGTCTTGACGAAGATTTGCAT 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396156601233183