Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12789 147 4e-30 seq2561 134 3e-26 >seq12789 Length=2278 Score = 147 bits (162), Expect = 4e-30 Identities = 364/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Plus Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 |||||| | ||||||| ||||| | ||| || ||||| |||||| || || || Sbjct 745 TTGTTGTTGATGTGCTTG---TAGAGGAGGCAAGCGAAGTCGGTGTGCATACCCTCATCA 801 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 ||| ||| | | ||||||||||| || || ||||||| || | | ||||||||| Sbjct 802 CGGGAGATCAACTCGTTGGAGAAGGTCAGGCCGGGCATGAGGCCACGTTTCTTGAGCCAG 861 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || | ||||||||| |||||||||||||||||||| || ||||| || || Sbjct 862 AAGATGGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCCACAGCTGCGAAGGCAACAAGT 921 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 ||||| ||| | ||| | | ||| ||||||| || ||||| || |||||||| Sbjct 922 CTCTCGGCGA---AGGCGCTGTGGTCGTTGATCCAGCGGAGAGCCCAATCAGCCTTCTTA 978 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCA 48400 ||| | || || | | | ||| |||||| || |||| | ||| | Sbjct 979 GTGACGACGGGGATGTTTGCAGTAGCCTTGAAGAGGAACTCTTTCTCATGAGGGTCTGAG 1038 Query 48401 ACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGG 48460 | |||| || ||| || ||| |||| ||||| | ||||| || || ||| Sbjct 1039 ATGAGGGTATCGATCAGGAGTGAGTAGGTCTCGGAGTGGATGTTCTCCATCATCATTTGG 1098 Query 48461 AACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGA 48520 || || |||||| | ||||| |||||| | || ||| |||| ||| || Sbjct 1099 AAACCATAGAAGCAGCGAGCCTCGGGCACCTGAATCTCAGTGCAGAACTTCTGGGCGAGG 1158 Query 48521 TTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGG 48580 ||||| ||||| || || || || ||||| |||||||| || || || || | || || Sbjct 1159 TTCTCGTTGACGATACCGTCGGAGGCAGCGAAGAAGGCGAGCACGTGCTTGACAAAGTGC 1218 Query 48581 CGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCC 48640 ||||||| | || | |||| ||| || || || | ||||| | ||| || Sbjct 1219 TTTTCGTTGTCATTAAGGCGCTCCCAGTCCTTAACATCGGTGGCGAGGTCGATTTCCTCA 1278 Query 48641 ACAGTCCAGAA 48651 |||||||| Sbjct 1279 GATGTCCAGAA 1289 >seq2561 Length=3495 Score = 134 bits (148), Expect = 3e-26 Identities = 487/753 (65%), Gaps = 18/753 (2%) Strand=Plus/Plus Query 213494 GGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAG 213553 ||| || ||||| || || | || | || |||| |||| | |||||| ||||| || Sbjct 1640 GGCAAGATTGCACACAGCTATTTCATCAGGACTTGTGAACTCTACGATCTCAGTGCAAAG 1699 Query 213554 GTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTT 213613 || || ||||| || ||||| | | ||| |||||| ||| || ||| || Sbjct 1700 ATTCGAGCTCTTAATGGTTCCTAGGTTTTACTAGTTGGACTTTCTATTGCAAGCATCTTT 1759 Query 213614 GTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTA 213673 |||||||||||| || | || ||||| | || ||| | | |||||| | ||| || | Sbjct 1760 GTAGAGCATGTAAGGAGTTCCAGTCTCAATTTGAGACTCTACTATCTGTCCCCAAAGCCA 1819 Query 213674 CCTGGCCTTGACCACCCGCCTGACAGC-TCCGG-GCGTAGCCTCGTACTGTTCGTAGAGC 213731 | |||||| | | | ||| || ||| | |||| || |||| ||||||||| Sbjct 1820 TCGGGCCTTAATAGTCTTGC-GACCGCGTCCAGTGCGT----TCATACTCCTCGTAGAGC 1874 Query 213732 TCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGG 213791 | | ||||| | ||||| || || || || || |||||||||||| Sbjct 1875 TTTTCAAATTCTTCTCCCCAAGTGGTGGTGAGGCCTGGGCACTCGTTGGGACACATGAGA 1934 Query 213792 CTCCAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGT 213850 ||||||| ||| | ||| ||||| ||||||||| ||| || | ||| || ||| Sbjct 1935 GTCCAGTCTTCGTTGTGCTC-AACTCTTCGCATGAACAAGTCAGGAATCCAGAGAGCGTA 1993 Query 213851 GAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 ||||| ||| | | || |||| ||| || |||||| ||||| | || ||||| Sbjct 1994 GAACAAGTCACGAGCTCTATTCTCTTCCTTACCGTGGTTTTTACGCAGCTGGAGGAAGTC 2053 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCG-- 213968 | ||||||| |||||| ||||| | |||| ||| || || || || |||||| Sbjct 2054 ATAGATGTCACTGTGCCATGGCTCTACATAGACGGCGAAAGCACCTTTTCTTTTGCCGCC 2113 Query 213969 -CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 ||||| || || || || ||||||| || | || | || ||||| Sbjct 2114 ACCCTGATCTACGTATCTTGCGGTGTCATTGAAGACCTTAAGCATAGGAATGAGTCCGTT 2173 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAG 214087 ||| | ||| || || || ||||| ||| | | || || | | | ||| | Sbjct 2174 GGAGTATCCATTTGTACCTCTGATATAGGAGTCAGCAGCTCTGATATCTGAGACGGAAAC 2233 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || |||||||| || ||| ||||| || || | ||| ||| || | || || Sbjct 2234 ACCGATGCCACCAGCAGCCTTAGAGATGATTGCAATTTGTTTCAGAGTTTCGAATATTCC 2293 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGC---AGCTCGAGAGCTGGGGCCTGGA 214204 | ||| ||| || ||| |||||||||||| | ||| | ||| ||| ||| Sbjct 2294 ATCTATGGAGTCCTCCTTGACAGTCAGCAAGAAGCAAGAACTC---ATCTGAGGCTTGGG 2350 Query 214205 CGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATG 214237 | |||||||||||||| ||||| |||| || Sbjct 2351 AGTTCCAGAGTTGAAAAGAGTGGGAGTGGCGTG 2383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931239145928960