Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2561 141 2e-28 seq12789 132 9e-26 >seq2561 Length=3495 Score = 141 bits (156), Expect = 2e-28 Identities = 484/747 (65%), Gaps = 7/747 (1%) Strand=Plus/Plus Query 221751 ACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAG 221810 ||| || |||||| || || || || || ||| ||||| || |||| | | || | Sbjct 1678 ACTCTACGATCTCAGTGCAAAGATTCGAGCTCTTAATGGTTCCTAGGTTTTACTAGTTGG 1737 Query 221811 ACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCA 221870 |||| | |||| ||| || ||||||||||| | ||| |||||||| | |||| | Sbjct 1738 ACTTTCTATTGCAAGCATCTTTGTAGAGCATGTAAGGAGTTCCAGTCTCAATTTGAGACT 1797 Query 221871 CCAGAATCTTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT 221930 | | |||| |||| || || ||| | | ||| | ||| || || || Sbjct 1798 CTACTATCTGTCCCCAAAGCCATCGGGCCTTAATAGTCTTGC-GACCGCGTCCA--GTGC 1854 Query 221931 TTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGAC 221990 ||||||| | |||||| | ||||| | ||| || | | | |||||||| | Sbjct 1855 GTTCATACTCCTCGTAGAGCTTTTCAAATTCTTCTCCCCAAGTGGTGGTGAGGCCTGGGC 1914 Query 221991 ACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGT 222050 || | ||||||||| ||| |||||| | ||||| | || || ||||||| | || Sbjct 1915 ACTCGTTGGGACACATGAGAGTCCAGTCTTCGTTGTGCTCAACTCTTCGCATGAACAAGT 1974 Query 222051 CCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTT 222110 | || ||||| || || | || | || | | | | ||| ||| |||| ||||| Sbjct 1975 CAGGAATCCAGAGAGCGTAGAACAAGTCACGAGCTCTATTCTCTTCCTTACCGTGGTTTT 2034 Query 222111 TCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAG 222170 | | ||| | | || ||| | |||||| |||||| ||||| | ||||||||| | || Sbjct 2035 TACGCAGCTGGAGGAAGTCATAGATGTCACTGTGCCATGGCTCTACATAGACGGCGAAAG 2094 Query 222171 CGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGA 222229 | || || ||| |||||||||||| || || | | | | | ||||||| | Sbjct 2095 CACCTTTTCTTTTGCCGCCACCCTGATCTACGTATCT-TGCGGTGTCATTGAAGACCTTA 2153 Query 222230 AGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCC 222289 || | || | ||||||||||| || || || || | || || | | | || Sbjct 2154 AGCATAGGAATGAGTCCGTTGGAGTATCCATTTGTACCTCTGATATAGGAGTCAGCAGCT 2213 Query 222290 CTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTC 222349 || | | | | || | ||||| ||||| || || ||||| || || Sbjct 2214 CTGATATCTGAGACGGAAACACCGATGCCACCAGCAGCCTTAGAGATGATTGCAATTTGT 2273 Query 222350 TTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGAC 222409 || ||||| || | || || || || |||||||||||||| |||||| || ||||| Sbjct 2274 TTCAGAGTTTCGAATATTCCATCTATGGAGTCCTCCTTGACAGTCAGCAAGAAGCAAGAA 2333 Query 222410 GACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAG 222469 |||||||| |||| | | | ||| || || |||||| ||||||| || || | Sbjct 2334 CTCATCTGAGGCTTGGGAGTTCCAGAGTTGAAAAGAGTGGGAGTGGCGTGAGTGAACCA- 2392 Query 222470 CCCCTAG-ACATCAGATCGTACGTCTC 222495 | |||| ||| ||||| || ||||| Sbjct 2393 CAGCTAGCTCATGAGATCATATGTCTC 2419 >seq12789 Length=2278 Score = 132 bits (146), Expect = 9e-26 Identities = 320/476 (67%), Gaps = 19/476 (4%) Strand=Plus/Minus Query 25574 ACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGA 25633 |||| |||| ||| ||||| ||||| | || ||||| || ||||| || ||||| || | Sbjct 1225 ACGAAAAGCACTTTGTCAAGCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGTATCGTCA 1166 Query 25634 ACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTG---GAGGCCAAGTGTT 25690 ||||||| || | ||| ||| || || | ||| ||| ||||| || | Sbjct 1165 ACGAGAACCTCGCCCAGAAGTTCTGCACTGAGATTCAG---GTGCCCGAGGCTCGCTGCT 1109 Query 25691 TCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA 25750 |||| |||||||| ||| || || || | ||||| ||| || | || |||| Sbjct 1108 TCTATGGTTTCCAAATGATGATGGAGAACATCCACTCCGAGACCTACTCA---CTCCTGA 1052 Query 25751 TG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807 | || ||| ||||| |||| ||| || || || | | ||| Sbjct 1051 TCGATACCCTCATCTCAGACCCTCATGAGAAAGAGTTCCTCTTCAAGGCTACTGCAAACA 992 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTA 25867 | ||| | ||| | |||||| ||||| | ||||||||| ||| ||||| Sbjct 991 TCCCCGTCGTCACTAAGAAGGCTGATTGGGCTCTCCGCTGGATCAACGACCACAGCGCC- 933 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 || | |||| | || || ||||| || ||||||||||||||||| ||| ||| || | Sbjct 932 --TTCGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCTCTT 875 Query 25928 T-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAA 25985 | ||| ||||||||||||||||| | | | || | ||||||||| ||| ||| ||||| Sbjct 874 TCTGCT-CCATCTTCTGGCTCAAG-AAACGTGGCCTCATGCCCGGCCTGACCTTCTCCAA 817 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 |||| | ||| | | || |||||| | |||| || || || ||||| ||||||| Sbjct 816 CGAGTTGATCTCCCGTGATGAGGGTATGCACACCGACTTCGCTTGCCTCCTCTACA 761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928551993287360