Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq24649 149 2e-31 >seq24649 Length=1633 Score = 149 bits (164), Expect = 2e-31 Identities = 356/533 (67%), Gaps = 14/533 (3%) Strand=Plus/Minus Query 45557 GGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCTC 45616 || |||||| | ||||| || ||||| | ||| | ||||| || ||| ||||||| || Sbjct 1612 GGCTTCCCGTTGGTGACCACAAAAAAACTACATTTGCGCTCTATTATTCATGAACTTATC 1553 Query 45617 TGGTTTTTAAAAGGCGATACGAATGTTCGC-TATTTGCAGGAGAATGGTGTGACGATTTG 45675 ||||||||| || || ||| |||| ||||| | || ||||| || ||||||| Sbjct 1552 TGGTTTTTAGCTGGATCAACCAAT-ATCGCTTATTTAAAAGAAAATGGCGTATCGATTTG 1494 Query 45676 GGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGTC 45735 ||| || ||||| |||||||| || ||| | || ||| |||| || | || ||||| Sbjct 1493 GGATGATTGGGCTGATGAAAATGGTGATTTAGGTCCAGTCTATGGGTCTCAGTGGCGTAG 1434 Query 45736 GTGGAAAGGGGC---TGACGGGAAAACGGTCGACCAAATTGCGGCGGTCTTTAAGGAAAT 45792 ||| | | | || ||| | ||||| |||||| | | || |||| Sbjct 1433 TTGGCCATTGCCAAATGGCGGTCA---TGTCGATCAAATTACACAACTGATTGCACAAAT 1377 Query 45793 CAAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGG 45852 || ||||| |||| | || || | ||| || ||||| |||||| | | Sbjct 1376 TAAATCGAACCCAGACTCTAGACGCCTGATCGTGTCTGCTTGGAATGTGGCAGAAATTCC 1317 Query 45853 GGAAATGAAGTTGCCCCCATGTCATTACGCCTTT---CAGTTTTACGTCGCGAATGGCCG 45909 | |||||| ||||||| || ||| || ||| |||||||| || || ||||| Sbjct 1316 AAATATGAAGCTGCCCCCCTGCCAT---GCATTTTTCCAGTTTTATGTTGCCGATGGCAA 1260 Query 45910 GTTGTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACAT 45969 | |||||||| | | || || || |||| ||||| || | || || || || Sbjct 1259 GCTGTCATGCCAGCTATATCAACGCAGTGCAGATATTTTTCTTGGGGTTCCATTCAATAT 1200 Query 45970 CGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACCTCGATGTCGGCGA 46029 ||| |||||| | ||||||||||||||||| |||||| || || | || || || Sbjct 1199 CGCATCCTATGCTTTATTGACACATATGGTTGCACAACAAACTGATCTGCAAGTTGGGGA 1140 Query 46030 ACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAG 46082 | |||| || || |||||| ||||| |||| ||||| ||||||||| Sbjct 1139 CTTTATTTGGACTGGTGGCGACTGTCATTTATACAGCAATCACATGGAACAAG 1087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157703157600366