Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq24649 89.7 8e-13 >seq24649 Length=1633 Score = 89.7 bits (98), Expect = 8e-13 Identities = 185/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 123072 TGTCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTG 123131 |||| || ||||| ||||| |||||||| || || || || || || || || || || | Sbjct 1257 TGTCATGCCAGCTATATCAACGCAGTGCAGATATTTTTCTTGGGGTTCCATTCAATATCG 1198 Query 123132 CCTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACT 123191 | || || || | ||| ||| ||| |||| || || | || || ||| || |||| Sbjct 1197 CATCCTATGCTTTATTGACACATATGGTTGCACAACAAACTGATCTGCAAGTTGGGGACT 1138 Query 123192 TCGTGTGGACGGGTGGGGA-TGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTG 123250 | | ||||| ||||| || ||| ||| | ||| ||| ||| |||| || | || Sbjct 1137 TTATTTGGACTGGTGGCGACTGT-CATTTATACAGCAATCACATGGAACAAGTCGACGAA 1079 Query 123251 CAGTTAACTCGCGAAC--CTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATT 123308 || ||| |||||||| | ||||| |||||| ||| ||| ||| || Sbjct 1078 CAATTA--TCGCGAACACCCCATCCATTACCAACACTAACAATTTTGCGTAAGCCAACAA 1021 Query 123309 CTATCTTCGACTATAAGTTTGAAGATTTCGA 123339 ||| || || ||||| |||||||||||||| Sbjct 1020 GTATTTTTGATTATAAATTTGAAGATTTCGA 990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777386861232400