Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq21373 84.2 2e-11 >seq21373 Length=1727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 219/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 39083 TTGTCACCTAAAATAAGAGCA-ACAGAGTCTTCTCCGATAAAATCTTTACCTATGATGAA 39141 |||||||||| ||| | |||| | | | || |||| ||| |||||||| || ||||| Sbjct 1290 TTGTCACCTAGAATTAAAGCAGATGGTGAATTG-CCGACAAATTCTTTACCGATAATGAA 1348 Query 39142 AGCTTCCGC-AAGACCTCGTGGCTCGGATTGGATTGCGTAAGTGAGTTTTATCCCAAACA 39200 ||||| || ||| | || |||| | || || ||||| | || || || || || Sbjct 1349 AGCTTGTGCCAAGCCATC-TGGCGAAGGCTGAATCGCGTAGCTAAGATTAATACCCCACT 1407 Query 39201 TAGACCCATCTCCGAGAAGATACTCAAAGTCTTCCTG-ATCACCTGGTGTGGTGATGATT 39259 | ||||| || ||||| | | |||| | | || ||| ||| |||| ||| || Sbjct 1408 GTGCGCCATCACCAAGAAGCTCTTGAAAG-CGTGGTGTATCTTGTGGCGTGGAGATAATG 1466 Query 39260 AAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAGTAGATCATGGGTTTG 39319 | ||| || ||| | |||||||||||| || || ||||| || ||||| ||||| Sbjct 1467 AGAATGTCTCGTATGCCCGCCAACATCAATGACGTTAGTGGGTAATAAATCATTGGTTTA 1526 Query 39320 TCATACACAGGGAGCAATTGCTTGCTCACACTGCGTGTTACCGGATGAAGGCGGGTTCCA 39379 || || | || | || |||||| ||| || || |||| |||||| || || Sbjct 1527 TCGTAGATCGGTAATAACTGCTTGGATACAGATTTCGTCACAGGATAAAGGCGAGTACCT 1586 Query 39380 CTTCCTCCCGCCAAAATAATACCTTT 39405 || || ||||| || || ||||| Sbjct 1587 GAGCCGCCAGCCAATATGATGCCTTT 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472481409174280