Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq24161 131 1e-24 seq17586 120 2e-21 seq5686 114 8e-20 seq18359 107 1e-17 seq7630 104 2e-16 seq20592 100 2e-15 seq18358 98.7 6e-15 seq2561 86.0 4e-11 >seq24161 Length=681 Score = 131 bits (144), Expect = 1e-24 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 474664 ACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGAC 474722 ||||||||| || ||||| ||||||||| |||| || ||| | || || || Sbjct 452 ACAAATTTCCGCAGAAGTTTTGCGCAAAATGAAGAAAACTGCTGAGGAC-TACCTCGGTG 510 Query 474723 AAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAG 474782 ||||||| || || || || |||||||||||||| || ||||| ||| | |||||||||| Sbjct 511 AAGAAGTCACAGAAGCGGTTATTACTGTTCCAGCTTACTTTAACGATGCACAACGTCAAG 570 Query 474783 CAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAA 474842 |||| |||||||| || | || || ||| | |||| ||| || || || ||||||| Sbjct 571 CAACCAAAGATGCAGGTCGTATCGCTGGTTTGGATGTAAAACGCATCATCAACGAACCAA 630 Query 474843 CAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||| || ||| | |||| ||||| || || || Sbjct 631 CAGCTGCGGCATTGGCTTTCGGTCTCGACAAAAA 664 >seq17586 Length=3380 Score = 120 bits (132), Expect = 2e-21 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 318685 GCATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTT 318744 || ||||| |||||||||||||||| ||| | | |||||| ||| || | ||| || Sbjct 2687 GCGTTTCTCACAGTACCATCATATTTCACCATCACATCTTCCAGTGCCTTTATCAATCTT 2628 Query 318745 CTTTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCT 318804 || | || |||||| || |||| ||||| | ||| |||| ||||| ||||||||||||| Sbjct 2627 CTCTATATATAACCAGTCTCTGAGGTTTTGACAGCCGTATCAATAAGACCTTCTCTTCCT 2568 Query 318805 GCCATAACTTGGAAAAAGAATTCA 318828 ||||| | ||||||||||| ||| Sbjct 2567 CCCATAGCATGGAAAAAGAACTCA 2544 >seq5686 Length=5338 Score = 114 bits (126), Expect = 8e-20 Identities = 307/466 (66%), Gaps = 15/466 (3%) Strand=Plus/Plus Query 297111 GGATTGGTGTATTTCAAGAAGTAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGA 297170 ||| ||||| | ||||||| ||||| ||||||| || |||||||||||| | || Sbjct 3117 GGACTGGTGCTTCTCAAGAAACAGATACTGGGGAAATCCTATTCCAATTTGGGCAAGCGA 3176 Query 297171 TGATGGTGAAGAAATAATTTGTATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAAT 297230 |||| ||||| || ||||| |||||||| || | ||| | |||| || || ||| Sbjct 3177 TGATATGGAAGAGATCGTTTGTGTTGGTTCAATTAAGGAACTCTAAGAGTTATCTGGATG 3236 Query 297231 TGATAATATTAATGATTTACATATTGATAAAATTGATCAAATAAAAATTCCTTCTCGTAA 297290 ||| | |||| ||| | || | || | |||||||| || | ||||| || | Sbjct 3237 TGAGCAGATTACCGATCTTCACAGAGAGAGCATTGATCACATCACTATTCCATCAAAGCA 3296 Query 297291 AGGAAAAGGCATGTTATCTCGTGTTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTTC 297350 ||||||||| | | | || | | || || || || ||||| || || ||||| Sbjct 3297 AGGAAAAGGAGTTCTGAGAAGAATTCCAGAAGTGTTTGACTGCTGGTTCGAGTCTGGTTC 3356 Query 297351 TATGCCTTATGGTCAAATTCATTATCCTTT-----TGAAAATTCCGAAATTTTAGACACT 297405 ||||||| | |||| | || |||||||| |||| | | | || | Sbjct 3357 CATGCCTTTCGCTCAAGTCCACTATCCTTTCTCTATGAATGATGAGGAGTT-------CA 3409 Query 297406 TCACAAGATTATATTGCAGATTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTT 297465 || |||||| ||| | ||||| | || | | |||||||| ||||||||||| Sbjct 3410 ACAAAAGATT-CCCTGCCAACTTTATCGCCGAGGGATTAGATCAAACTAGAGGTTGGTTC 3468 Query 297466 TATACTTTATTAGTTCTTTCTACAGCTATATTTAACAAACCAGCATTTAAAAATGTAATT 297525 |||||||| | || | || |||||| | || | | | | || |||| | ||| Sbjct 3469 TATACTTTGATGGTAATCTCCACAGCTGTTAAGAAGAGAGAACCTTTCCAAAACTTGATT 3528 Query 297526 GTTACAGGAATTGTTAACG-CAGCTGATGGACAAAAAATGTCAAAA 297570 || | || || ||| | |||| |||||||| || ||||||||| Sbjct 3529 GTAAATGGTATCGTTCTTGCCAGC-GATGGACAGAAGATGTCAAAA 3573 >seq18359 Length=859 Score = 107 bits (118), Expect = 1e-17 Identities = 134/179 (75%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 480594 TTATAATCAGCT-AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 ||||| || ||| |||||||| ||||||||| | |||||| ||||| ||||| | || Sbjct 375 TTATAGTC-GCTGAGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTG 433 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||| || || ||||| || |||||||| ||||| ||| ||| || || || || Sbjct 434 TTGATCGGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTC 493 Query 480713 AGTGTGT--GAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | || || || | || || || || || |||||||||||||| || |||||||| Sbjct 494 GGAGGGTTCGACGT--CGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTG 550 Score = 100 bits (110), Expect = 2e-15 Identities = 121/162 (75%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 |||||| ||||||||||||||||| || ||||| || | |||||||| || || || Sbjct 618 GTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTGATCGGGTGGGATG 677 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTC 480727 || |||||||| || || || ||||| ||||| || |||| || | || | | Sbjct 678 CCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGATGGCTCAACGTCC 737 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || |||||||| ||||| ||||||||||| Sbjct 738 AA-AGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTG 778 >seq7630 Length=872 Score = 104 bits (114), Expect = 2e-16 Identities = 133/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 480594 TTATAATCAGCT-AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTG 480652 || ||||| ||| || |||||| |||||||||||||| |||||||| || || | || Sbjct 546 TTGTAATC-GCTGAGGGTTCTGCCGTCTTCAAGTTGCTTGCCAGCAAAGATGAGTCTCTG 604 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||| || || || ||||| ||||||||||| ||||| |||||| || || || || Sbjct 605 TTGGTCGGGTGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC 664 Query 480713 AG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || | ||| ||| || || || ||||| || ||||||||||| ||||| Sbjct 665 GGATGGCTCAACGTCCAA-GGTGATGGTCTTTCCGGTAAGGGTCTTAACGAAGATTTG 721 Score = 102 bits (112), Expect = 5e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| |||||||| |||||||| ||||| || || || ||||| | |||| Sbjct 318 TTGTAGTCAGAAAGAGTTCTTCCGTCTTCAAGCTGCTTGCCTGCGAAGATAAGTCTTTGT 377 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || ||||| ||||||||||| || ||||| || || || || ||||| Sbjct 378 TGATCGGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCT 437 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | ||||| || || || || |||||||| ||||| ||||| ||||| Sbjct 438 GAGGGCTCAACATCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTG 493 >seq20592 Length=348 Score = 100 bits (110), Expect = 2e-15 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | ||| || ||||| || || | | ||||||||| || || || ||||||||| Sbjct 17 TCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATACCTTCCTTG 76 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||| ||||| |||||| ||| || ||||| | || | || || | |||||| Sbjct 77 TCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAA-CGTCTAAGGTAAT 135 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTT 480768 ||||||||| ||||| || |||||||| |||| Sbjct 136 AGTTTTACCAGTGAGTGTTTTAACGAAGATTT 167 >seq18358 Length=408 Score = 98.7 bits (108), Expect = 6e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 480627 TGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATC 480686 ||||||||||| ||||| || | ||||| ||||| || || ||||||||||| |||||| Sbjct 405 TGCTTTCCAGCGAAAATGAGTCTCTGTTGGTCAGGTGGGATACCTTCCTTGTCCTGAATC 346 Query 480687 TTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACC 480745 || |||||| |||||| || |||| || | || || ||||| || || || || Sbjct 345 TTGGCCTTGACATTTTCAATGGTGTCAGATGGCTCAA-CATCGAGGGTGATGGTCTTTCC 287 Query 480746 GGTGAGAGTCTTAACGAAAATTT 480768 ||||| || || |||||||||| Sbjct 286 AGTGAGGGTTTTGACGAAAATTT 264 >seq2561 Length=3495 Score = 86.0 bits (94), Expect = 4e-11 Identities = 250/381 (66%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 592184 TCAAATGGAATTTTAAATATAGCAAACACATCGGCTAATCCTTGTACACCAACGCCAATA 592243 |||||||||||||| | | || ||||||| || ||||| ||||| | |||||| Sbjct 1419 TCAAATGGAATTTTGAGCAATTAAAGTGCATCGGCAAACCCTTGCACACCGATTCCAATA 1478 Query 592244 GGTCTATGGCGTAA-ATTTGAAACACGTGTTTTTTCTACTGGATAATAATTTACATCAAT 592302 ||||| | || ||| |||||| ||| | | | |||||||| ||||| ||| || Sbjct 1479 GGTCTGT-GCTTAAGATTTGAGTTACGAGCCTCAGCGACTGGATAGTAATTGTTATCTAT 1537 Query 592303 AATATTATTTAAATTTCTTGTAATAATTCTTGCGACCTTGTACAATTTATTATAATCAAA 592362 ||| ||||||| ||| | || || | | | ||| || || ||| | ||| || | Sbjct 1538 AATTTTATTTAGATTCTTAGTGATTCTCTTAGTGACAGCGTGCAGTTTCTCATAGTCGTA 1597 Query 592363 CTCTGGAACACCGTTTTCATGAATAATAAATTTAGGTAAACAAATTGATGACAAATTACA 592422 ||| | | || ||| ||| ||| ||| || | ||| || | | ||| || Sbjct 1598 TTCTTG--CTCCTCCTTCTTGACGAATCTATTGAG----AGCAATAGAGGCAAGATTGCA 1651 Query 592423 AACTGCATATTCATCTGCAGATGAGAATTCTACAATTTCACAACAAAGATTTGAGCCATT 592482 || || |||||| | | || ||| ||||| || ||| |||||||| |||| || Sbjct 1652 CACAGCTATTTCATCAGGACTTGTGAACTCTACGATCTCAGTGCAAAGATTCGAGCTCTT 1711 Query 592483 AATTACGCCTATATTAATCTGATTTGATTTTTGATTGATAGCATCTTTAAACAATATGTA 592542 ||| |||| || || || || ||| |||| ||||||||| | | ||||| Sbjct 1712 AATGGTTCCTAGGTTTTACTAGTTGGACTTTCTATTGCAAGCATCTTTGTAGAGCATGTA 1771 Query 592543 TGGTACACCTGTTTCAATTTG 592563 || || || |||||||| Sbjct 1772 AGGAGTTCCAGTCTCAATTTG 1792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267097434727412