Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2561 141 5e-29 >seq2561 Length=3495 Score = 141 bits (156), Expect = 5e-29 Identities = 217/304 (71%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 25916 TTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTC 25975 || ||||||||| | ||| || || || |||||||| | || || || || || | Sbjct 1947 TTGTGCTCAACTCTTCGCATGAACAAGTCAGGAATCCAGAGAGCGTAGAACAAGTCACGA 2006 Query 25976 GCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAG 26035 ||||| | ||||| || ||||| || || || | | ||| ||| | || || | Sbjct 2007 GCTCTATTCTCTTCCTTACCGTGGTTTTTACGCAGCTGGAGGAAGTCATAGATGTCACTG 2066 Query 26036 TGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACG 26095 |||||||| |||| ||||| || ||| |||||||||||| || ||||| ||||||||| Sbjct 2067 TGCCATGGCTCTACATAGACGGCGAAAGCACCTTTTCTTTTGCCGCCACCCTGATCTACG 2126 Query 26096 TATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTT 26155 |||||||| || |||||||| || || | ||| |||| | ||| | || |||| ||| Sbjct 2127 TATCTTGCGGTGTCATTGAAGACCTTAAGCATAGGAATGAGTCCGTTGGAGTATCCATTT 2186 Query 26156 GT-GCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAG-CATGAATACCGATTCCAC 26213 || || || || | ||| | | | ||| ||||| |||| | || |||||| |||| Sbjct 2187 GTACCTCTG-ATATAGGAGTCAGCAGCTCTGATATC-TGAGACGGAAACACCGATGCCAC 2244 Query 26214 CAGC 26217 |||| Sbjct 2245 CAGC 2248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252962226495425