Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq24245 116 5e-21 >seq24245 Length=617 Score = 116 bits (128), Expect = 5e-21 Identities = 221/322 (69%), Gaps = 14/322 (4%) Strand=Plus/Minus Query 47790 TGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGAC 47849 ||| || | |||||| ||| |||| |||| ||| | ||| ||||||| | ||||| Sbjct 546 TGTTGCTAAAACAAAGGTATCTGGTTGTTCTGCTTGCAACATGCGCCACATACCTTCGAC 487 Query 47850 ATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTC 47909 ||| ||| | |||| |||||||| || ||||| | ||| || || | | || || Sbjct 486 ATACTCTTTCGCATAGCCCCAGTCGCGTTTCGCATCCATATTGCCCAGTTCAAGGCAATC 427 Query 47910 TTGCTTACCTTCAGAGATTGCTTTTAATG-CTCTT---GTAATCTTACGAGTTACAAAAG 47965 | | ||| | || ||||| | || |||||||| || || ||||| Sbjct 426 TAATTGTCCT----AATTTAATTTTAGCGACTGAATCAGTAATCTTGCGCGTCACAAA-- 373 Query 47966 TTTCAC---CACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTC 48022 ||| | |||| ||||||||||||||||| | |||||||||||| ||| | |||| Sbjct 372 -TTCGCGCCCACGCAACGGAGATTCATGATTAAACAAAATACCACTACAAGCAAAGATTC 314 Query 48023 CGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAG 48082 | || ||||||||||| || | ||||| | |||| | |||||| |||||||| | Sbjct 313 CATAAGATTCACGATAATTAATCGTCATCCAATGGGCATACAATTTTGCGACACCATACG 254 Query 48083 GAGAACGTGGATAGAAAGGTGT 48104 | ||| ||||| || ||||| Sbjct 253 GGCTACGAGGATAAAACGGTGT 232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665284611209080