Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2561 129 7e-25 seq12789 116 4e-21 >seq2561 Length=3495 Score = 129 bits (142), Expect = 7e-25 Identities = 743/1162 (64%), Gaps = 49/1162 (4%) Strand=Plus/Minus Query 75118 TGATACGAAGCGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCT- 75176 || ||||| || ||||| | | || ||||||||| ||| ||| | || ||||||| Sbjct 2575 TGCTACGAT-CGTGACTACAACTATGATTACTTTGGGTTCAGAACATTAGA-AAGAGCTT 2518 Query 75177 ATCT-TCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTC 75235 | || | || || | | | || | | |||| | || || ||||| ||||| | ||| Sbjct 2517 ACCTATTAAAGGATGGTTC-CACCATTTTGGAGAGACCTCAACACATGCTCATGAGAGTC 2459 Query 75236 GCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCC 75295 || || || ||| | |||| | | ||| | || |||||||| || ||| | Sbjct 2458 AGCATTGGTATTCACAAGCAAGATTTAGCTTCAGCATTTGAGACATATGATCTCATGAGC 2399 Query 75296 CAAGGTATG-TTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 | | | || |||| |||||| || || || || ||||| |||| || || | || || Sbjct 2398 TA-GCTGTGGTTCACTCACGCCACTCCCACTCTTTTCAACTCTGGAACTCCCAAGCCTCA 2340 Query 75355 GATGTCCAGTTGCTTCCTTATCGCCAAC----AAGGAGGACTCAATCAACGGTATCTATG 75410 |||| |||| ||| ||| | || || ||||||||||| || | || || | | Sbjct 2339 GATG---AGTT-CTTGCTTCTTGCTGACTGTCAAGGAGGACTCCATAGATGGAATATTCG 2284 Query 75411 GAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCC 75470 |||||| | | ||| ||||| ||| ||||| || || || | | || Sbjct 2283 AAACTCTGAAACAAATTGCAATCATCTCTAAGGCTGCTGGTGGCATCGGTGTTTCCGTCT 2224 Query 75471 ATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTA 75530 ||| | ||||| | | || ||| | || |||||||| | || | || | | Sbjct 2223 CAGATATCAGAGCTGCTGACTCCTATATCAGAGGTACAAATGGATACTCCAACGGACTCA 2164 Query 75531 TTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTCGCA 75590 |||| |||||| || || || | ||| || | || ||| |||| | | |||| | | Sbjct 2163 TTCCTATGCTTAAGGTCTTCAATGACACCGCAAGATACGTAGATCAGG-GTGGCGGCAAA 2105 Query 75591 AGG---GGTCCAT-CGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTT 75646 || ||| | | ||| ||||| | || |||||||| || ||| || ||||| Sbjct 2104 AGAAAAGGTGCTTTCGCCGTCTATGTAGAGCCATGGCACAGTGACATCTATGACTTCCTC 2045 Query 75647 GAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTG 75706 || | || ||||| ||| | |||||| | | | | || | || | | || Sbjct 2044 CAGCTGCGTAAAAACCACGGTAAGGAAGAGAATAGAGCTCGTGACTTGTTCTACGCTCTC 1985 Query 75707 TGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGT 75766 |||||||| ||| | |||||| | |||||| | | | ||| |||| | ||| Sbjct 1984 TGGATTCCTGACTTGTTCATGCGAAGAGTTGAGCACAACGAAGACTGGACTCTCATGTGT 1925 Query 75767 CCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACA 75826 || || || ||||| ||| || | | ||| || || |||||| |||||| Sbjct 1924 CCCAACGAGTGCCCAGGCCTCACCACCACTTGGGGAGAAGAATTTGAAAAGCTCTACGAG 1865 Query 75827 AAGTATGAAGA----GGAGG--GTAGAGCCAATGCGACTGTACCAGCCGCCGATG--TTT 75878 |||||||| ||| | || | ||| |||| | ||| ||||| ||| Sbjct 1864 GAGTATGAACGCACTGGACGCGGTCG---CAA---GACTATTAAGGCC--CGATGGCTTT 1813 Query 75879 GGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATG 75938 || || | | || || | ||||||||||| || || ||||| ||||| |||| Sbjct 1812 GGGGACAGATAGTAGAGTCTCAAATTGAGACTGGAACTCCTTACATGCTCTACAAAGATG 1753 Query 75939 CTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCA 75998 |||| || | ||| ||| | | || | ||||| || |||||||| |||||||||| Sbjct 1752 CTTGCAATAGAAAGTCCAACTAGTAAAACCTAGGAACCATTAAGAGCTCGAATCTTTGCA 1693 Query 75999 CGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCG 76058 | || || |||||| |||| | ||||| | ||||| |||||| | || || || | Sbjct 1692 CTGAGATCGTAGAGTTCACAAGTCCTGATGAAATAGCTGTGTGCAATCTTGCCTCTATTG 1633 Query 76059 CCCTTCCAAAG-TATGTCAATGAAGAGACTCGCA--CTTTTGATTATGAAAAACTTCATG 76115 | | || | || | ||||| |||| || ||| | || ||||| ||||| || | Sbjct 1632 CTC-TCAATAGATTCGTCAA-GAAG-GAGGAGCAAGAATACGACTATGAGAAACTGCACG 1576 Query 76116 AAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCC-- 76173 |||| |||| | || || |||||||| | | || || | |||| ||||| Sbjct 1575 CTGTCACTAAGAGAATCACTAAGAATCTAAATAAAATTATAGATAACAATTACTATCCAG 1516 Query 76174 -CGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAG 76232 || |||| || || || || ||| | |||||||||||||| | ||||| |||| Sbjct 1515 TCGCTGAG---GCTCGTAACTCAAATCTTAAGCACAGACCTATTGGAATCGGTGTGCAAG 1459 Query 76233 GTCTCGCGGATGTA-TTTATTT 76253 | | || |||| | |||| || Sbjct 1458 GGTTTGCCGATGCACTTTAATT 1437 >seq12789 Length=2278 Score = 116 bits (128), Expect = 4e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 65066 GCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGT 65125 || ||||||||||| | ||| |||| || || ||||||||| |||||||||||||| | Sbjct 937 GCGCCTTCGCCGAGAGACTTGTTGCCTTCGCAGCTGTGGAGGGCATCTTCTTCTCCGGCT 878 Query 65126 CATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAA 65185 | |||||| | || | ||| | ||||| || || |||||||| ||||| |||||| | Sbjct 877 CTTTCTGCTCCATCTTCTGGCTCAAGAAACGTGGCCTCATGCCCGGCCTGACCTTCTCCA 818 Query 65186 ATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | || | || ||||| ||||||||| | ||| Sbjct 817 ACGAGTTGATCTCCCGTGATGAGGGTATGCAC 786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596381538890720