Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq7630 185 1e-41 seq18359 178 2e-39 seq7629 152 7e-32 seq20592 141 1e-28 seq18358 132 6e-26 seq14911 89.7 7e-13 >seq7630 Length=872 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||| || || ||||| || || || || ||||| || || |||||| | | Sbjct 498 GTATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTTGATGTTGAGCCCT 439 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 |||| || ||||| ||| | || |||||||| || || |||||||| ||||| ||||||| Sbjct 438 CAGATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCCGATC 379 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 | ||| ||||||| || || || || ||||||||||| ||| | || || |||| |||| Sbjct 378 AACAAAGACTTATCTTCGCAGGCAAGCAGCTTGAAGACGGAAGAACTCTTTCTGACTACA 319 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || |||| |||||||| || || ||| | || || || || | |||||| Sbjct 318 ACATTCAGAAGGAGTCAACCCTCCACTTGGTCCTGAGACTCAGAGGTGGT 269 Score = 181 bits (200), Expect = 1e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || |||||||| ||||| || |||||| | || |||||| | || Sbjct 724 ATGCAAATCTTCGTTAAGACCCTTACCGGAAAGACCATCACCTTGGACGTTGAGCCATCC 665 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| |||||||| ||||| ||||| || || |||||||| || Sbjct 664 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCCGACCAA 605 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || |||| || |||||||| || || |||||||| || | |||||| ||||||||| Sbjct 604 CAGAGACTCATCTTTGCTGGCAAGCAACTTGAAGACGGCAGAACCCTCAGCGATTACAAC 545 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||||||||| || ||| | || || || ||| | || ||| Sbjct 544 ATCCAGAAGGAGTCTACCCTTCACTTGGTGCTCAGACTTAGAGGAGGT 497 >seq18359 Length=859 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || || || ||||| || ||||| ||||| || || | || Sbjct 553 ATGCAAATTTTTGTAAAGACTCTCACCGGAAAGACAATCACACTCGACGTCGAACCCTCC 494 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | ||||||||||| ||||| || || || || ||||||||||| Sbjct 493 GACACCATCGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGAATCCCACCCGATCAA 434 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||||| ||||| || || ||||||||||||| | || ||| || || ||| Sbjct 433 CAGAGACTTATCTTTGCCGGAAAGTAGCTTGAAGATGGTAGAACTCTCAGCGACTATAAC 374 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||||||||||||||||| ||||| || || || || | |||||| Sbjct 373 ATTCAAAAGGAGTCTACTCTCCACCTAGTCCTCAGACTCAGAGGTGGT 326 Score = 149 bits (164), Expect = 8e-31 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||| || ||||| ||||| || ||||| || || || | || |||||| | | Sbjct 783 GTATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCAT 724 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| || || ||| |||| || || || || || ||||| ||||| |||||||||| Sbjct 723 CTGACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATC 664 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 | || |||| ||||| || || || || |||||||| || | ||| | || |||| Sbjct 663 AACAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACA 604 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAG 172076 || |||| |||||||| ||||| || | ||||| || Sbjct 603 ACATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAG 567 >seq7629 Length=3052 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||| | ||||| || || || | ||||| || ||||||||||| || || ||| | || Sbjct 2948 ATGTAGATCTTCGTCAAGACTTTGACTGGTAAGACTATCACCCTTGATGTGGAGCCTTCC 2889 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || ||||||||||| || |||||||| || || || ||||| Sbjct 2888 GACACCATCGAAAACGTGAAGGCCAAGATTCAGGACAAGGAAGGTATCCCTCCTGATCAA 2829 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || |||| || |||||||| || || | ||||| || | ||| | ||||||||||| Sbjct 2828 CAGAGACTCATCTTTGCTGGAAAGTAGTTGGAAGACGGTAGAACCTTGTCTGATTACAAC 2769 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | ||||||||||| || || ||| | || || || || | ||||| Sbjct 2768 ATCCAAAAGGAGTCCACCCTCCACTTGGTGCTCAGACTCAGAGGTGG 2722 >seq20592 Length=348 Score = 141 bits (156), Expect = 1e-28 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||| ||||||| || ||||| || ||||| |||||||| ||| | || |||||| | ||| Sbjct 171 ATGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTGAGCCATCA 112 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || |||| || ||||| ||||| |||||||| || ||||||||||| Sbjct 111 GATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCCGATCAA 52 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTC 172029 ||| || | || || ||||||||||| | ||||| || | |||||| Sbjct 51 CAAAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGTAGAACCCTC 4 >seq18358 Length=408 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||| |||| || || |||||||| |||||||| || ||||||||||| |||||| | || Sbjct 259 TATGTAAATTTTCGTCAAAACCCTCACTGGAAAGACCATCACCCTCGATGTTGAGCCATC 318 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || || |||| ||||||||||| || |||||||| || ||||| || || Sbjct 319 TGACACCATTGAAAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCACCTGACCA 378 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAG 172008 || |||| ||||| ||||| || ||| Sbjct 379 ACAGAGACTCATTTTCGCTGGAAAGCAG 406 >seq14911 Length=2466 Score = 89.7 bits (98), Expect = 7e-13 Identities = 149/206 (72%), Gaps = 17/206 (8%) Strand=Plus/Plus Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638 || || ||||| ||||| || || ||| | ||||| || |||||||| || || |||| Sbjct 1128 CCTGGAACTGGAAAAACTCTCCTGGCTAGAGCTATTGCAGGTGAATCAGGTA-CCTCTTT 1186 Query 198639 CTTCAGTGCTCCGC-GGCG---AGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCG 198694 | | || || | | ||| | ||| || ||||||||||| || ||||| || ||| | Sbjct 1187 CAT--GTACTGCACAGGCTCTCATTTTGAT-GAGATGTTCGTCGGAGTTGGCGCAAAGAG 1243 Query 198695 CGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATC---AACCATGTATCATCTTCATTGA 198751 ||| | |||||||| || |||| | |||||| |||| || ||||||||||| || Sbjct 1244 AGTCAGAGAACTCTTCTAGGAAGC---TAAAAATCACAAACCTTGCATCATCTTCATAGA 1300 Query 198752 TGAGATTG--ACGCTG-TTGGTAAGA 198774 ||| || | || ||| ||| ||||| Sbjct 1301 TGAAATAGATACCCTGCTTGCTAAGA 1326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657655017101680