Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq18359 125 1e-23 seq20592 107 3e-18 seq7629 104 4e-17 >seq18359 Length=859 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| | || || || || || | |||| ||| || ||| ||||||||| Sbjct 326 ACCACCTCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCT 385 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | |||||| ||| || | | ||||||||||| || | |||||||||||| || || Sbjct 386 GAGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTGG 445 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| ||||| ||||| || |||| ||| | ||| || || ||||| | || || Sbjct 446 GATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGAC 505 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||||| ||||||||| Sbjct 506 GTCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||| |||| || |||| ||| | || | ||| || ||| || Sbjct 545 AATTTGCATTCCTCCTCTTAATCTGAGAACCAAATGAAGAGTGGACTCCTTCTGAATGTT 604 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| ||| ||||| || || | ||| |||||||| ||||| | ||||||||| Sbjct 605 GTAGTCGCTTAAGGTTCTGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAGTCTCTGTTG 664 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || || || || || || ||||| | || | || ||| || || || Sbjct 665 ATCGGGTGGGATGCCCTCCTTGTCCTGGATTTTAGCCTTGACGTTCTCAATGGTGTCAGA 724 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || | ||| || || || || || || || || || || |||||||| Sbjct 725 TGGCTCAACGTCCAAAGTAATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 781 >seq20592 Length=348 Score = 107 bits (118), Expect = 3e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 193197 GTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATT 193256 |||||| || || |||||||| || || || || ||||| |||||||| || || || Sbjct 8 GTTCTACCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATA 67 Query 193257 CCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCT 193316 ||||| || ||||| || || | || | |||| || ||||| || | |||||| ||| Sbjct 68 CCTTCCTTGTCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACGTCT 127 Query 193317 AGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | || ||||||||||| || || ||||| || || |||| ||| || Sbjct 128 AAGGTAATAGTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTT 174 >seq7629 Length=3052 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | || || |||| || | || | ||| || || || || || || Sbjct 2722 CCACCTCTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGAC 2781 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || |||||| || || || | ||||| ||||| || | |||||||||||||||||| Sbjct 2782 AAGGTTCTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGG 2841 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || || || || |||| || | ||| || || ||||||| ||| || Sbjct 2842 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACA 2901 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| ||||| || | || || || || || | |||||| Sbjct 2902 TCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACATTTT 2951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899370795196080