Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq18359 104 3e-17 seq20592 91.5 2e-13 >seq18359 Length=859 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | || ||||| || ||||| || || || || ||| Sbjct 781 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATTACTTTGGACGTTGAGCCATCT 722 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || |||||| || || || || ||||| || || || ||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAAATCCAGGACAAGGAGGGCATCCCACCCGATCAA 662 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| |||||| ||||| ||||| || ||||| |||||| ||| || || || Sbjct 661 CAGAGACTGATTTTCGCCGGAAAGCAACTTGAAGACGGCAGAACCTTAAGCGACTACAAC 602 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || ||| | || |||||||| || | ||||||||||| || Sbjct 601 ATTCAGAAGGAGTCCACTCTTCATTTGGTTCTCAGATTAAGAGGAGG 555 >seq20592 Length=348 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||| |||| || |||||||| | ||||| ||||||||||| ||||| || || Sbjct 174 AACATGTAAATCTTCGTTAAAACACTCACTGGTAAAACTATTACCTTAGACGTTGAGCCA 115 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||| || || ||| || ||||| || ||||| || || || || Sbjct 114 TCAGATACCATCGAAAATGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCCGAT 55 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 |||||||||||||| | || ||||| || | ||||| Sbjct 54 CAACAAAGATTGATCTTCGCTGGTAAACAATTGGAAGA 17 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731641286500400