Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetmemena_20sp._20SeJ-2015_20[genbank_20GCA_5F001273295.2_202015-12- 23] 25,219 sequences; 60,638,083 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq20592 118 2e-21 seq7629 91.5 3e-13 seq18359 84.2 4e-11 >seq20592 Length=348 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || ||||||||||||||||| ||||| ||||| |||||||| ||||| || ||||| || Sbjct 17 TCTTCCAATTGTTTACCAGCGAAGATCAATCTTTGTTGATCGGGTGGGATACCTTCCTTG 76 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 ||||| || ||| || ||||| || | |||||| | || || |||| ||||| Sbjct 77 TCTTGGATCTTAGCCTTGACATTTTCGATGGTATCTGATGGCTCAACGTCTAAGGTAATA 136 Query 192502 GTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||||||||| | |||||||| || || | ||| || Sbjct 137 GTTTTACCAGTGAGTGTTTTAACGAAGATTTACATGTT 174 >seq7629 Length=3052 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 |||||||| || | | || || || | || | ||| || ||| || |||||||| Sbjct 2722 CCACCTCTGAGTCTGAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGAC 2781 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || |||| | || ||||| | || ||||||||||| | ||||||||||||||| || Sbjct 2782 AAGGTTCTACCGTCTTCCAACTACTTTCCAGCAAAGATGAGTCTCTGTTGATCAGGAGGG 2841 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || || || || || || | || || | || || Sbjct 2842 ATACCTTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCGATGGTGTCGGAAGGCTCCACA 2901 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || |||||||| || || || | || |||| |||||| Sbjct 2902 TCAAGGGTGATAGTCTTACCAGTCAAAGTCTTGACGAAGATCTACATTTT 2951 >seq18359 Length=859 Score = 84.2 bits (92), Expect = 4e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 ||||||||| || | | |||| || | ||||| ||| ||| || || ||||| || Sbjct 326 ACCACCTCTGAGTCTGAGGACTAGGTGGAGAGTAGACTCCTTTTGA-ATGTTATAGTCGC 384 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | |||| |||| || | | || || |||||||| | |||||||||||| |||| Sbjct 385 TGAGAGTTCTACCATCTTCAAGCTACTTTCCGGCAAAGATAAGTCTCTGTTGATCGGGTG 444 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||| ||||| ||||| || || ||| ||||| || | || || | ||| | Sbjct 445 GGATTCCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCGATGGTGTCGGAGGGTTCGA 504 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || || || || || || || || | || || | ||| || |||||| Sbjct 505 CGTCGAGTGTGATTGTCTTTCCGGTGAGAGTCTTTACAAAAATTTGCATT 554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984161896360650